Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,030,864 – 17,030,960 |
Length | 96 |
Max. P | 0.975625 |
Location | 17,030,864 – 17,030,960 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 87.52 |
Mean single sequence MFE | -28.07 |
Consensus MFE | -22.13 |
Energy contribution | -22.63 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.04 |
Mean z-score | -4.12 |
Structure conservation index | 0.79 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975625 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17030864 96 - 22407834 ---UUCCCUUUCCA---------------UUCCCCUCUUUUUGUGUGCGACUCCUACGCAAUUAAGCUUUAUUUAUUCUUGGCCACAGCAAUUGAUUGCUGUGCCAAGCAAUAA ---...........---------------.......(((.(((((((.......)))))))..)))......(((((((((((.(((((((....))))))))))))).))))) ( -25.30) >DroSec_CAF1 138259 96 - 1 ---UUCCCUUUCCA---------------UUCCCCUCUUUUUGUGUGCGACUCCUACGCAAUUAAGCUUUAUUUAUUCUUGGCCACAGCAAUUGAUUGCUGUGCCAAGCAAUAA ---...........---------------.......(((.(((((((.......)))))))..)))......(((((((((((.(((((((....))))))))))))).))))) ( -25.30) >DroSim_CAF1 141423 96 - 1 ---UUCCCUUUCCG---------------UUCCCCUCUUUUUGUGUGCGACUCCUACGCAAUUAAGCUUUAUUUAUUCUUGGCCACAGCAAUUGAUUGCUGUGCCAAGCAAUAA ---...........---------------.......(((.(((((((.......)))))))..)))......(((((((((((.(((((((....))))))))))))).))))) ( -25.30) >DroEre_CAF1 139758 96 - 1 ---UUCCCCUACCA---------------UUCCCCUCCUUUUGUGUGCGACUCCUACGCAAUUAAGCUUUAUUUAUUCUUGGCCGCAGCAAUUGAUUGCUGUGCCAAGCAAUAA ---...........---------------...........(((((((.......)))))))...........(((((((((((.(((((((....))))))))))))).))))) ( -24.40) >DroYak_CAF1 144800 96 - 1 ---UUCCCUUUCCA---------------UUCUCCUCUUUUUGUGUGCGACUCCUACGCAAUUAAGCUUUAUUUAUUCUUGGCCGCAGCAAUUGAUUGCUGUGCCAAGCAAUAA ---...........---------------.......(((.(((((((.......)))))))..)))......(((((((((((.(((((((....))))))))))))).))))) ( -24.90) >DroAna_CAF1 129256 114 - 1 CCCACCCCCCACCCUCGGGGGGUUCGUUUUUGCGCCCUCUGUGUGGGCGCCUCCUACGCAAUUAAGCUUUAUUUAUUCUCGGCCUCAGCAAUUGAUUGCUGUGCCAAGCAAUAA ...(((((((......)))))))..((....((((((.......)))))).....))((......)).....(((((((.(((..((((((....)))))).))).)).))))) ( -43.20) >consensus ___UUCCCUUUCCA_______________UUCCCCUCUUUUUGUGUGCGACUCCUACGCAAUUAAGCUUUAUUUAUUCUUGGCCACAGCAAUUGAUUGCUGUGCCAAGCAAUAA ........................................(((((((.......)))))))...........(((((((((((.(((((((....))))))))))))).))))) (-22.13 = -22.63 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:43 2006