Locus 6047

Sequence ID 2L_DroMel_CAF1
Location 17,029,179 – 17,029,269
Length 90
Max. P 0.584260
window9600

overview

Window 0

Location 17,029,179 – 17,029,269
Length 90
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 84.01
Mean single sequence MFE -19.17
Consensus MFE -11.64
Energy contribution -12.03
Covariance contribution 0.39
Combinations/Pair 1.12
Mean z-score -2.86
Structure conservation index 0.61
SVM decision value 0.10
SVM RNA-class probability 0.584260
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17029179 90 + 22407834
ACCAAAUACUUAAACUGCGAUUGCGAUGCGCAUACGCCAUGUGUGCCAU----CGUUCUUAUCGCCAUCCUCUCAACC------CCCAUUACCAUCAUCG
................(((((.((((((.((((((.....)))))))))----)))....))))).............------................ ( -22.40)
>DroSec_CAF1 136511 91 + 1
ACCAAAUACUUAAACUGCGAUUGCGAUGCGCAUACGCCAUGUGUGCCAU----CGUUCUUAUCGCCAUCCUCCCAACCC-----CCCAUUACCAUCAUGG
................(((((.((((((.((((((.....)))))))))----)))....)))))..............-----.((((.......)))) ( -23.40)
>DroSim_CAF1 139745 91 + 1
ACCAAAUACUUAAACUGCGAUUGCGAUGCGCAUACGCCAUGUGUGCCAU----CGUUCUUAUCGCCAUCCUCCCAACCC-----CCCAUUACCAUCAUCG
................(((((.((((((.((((((.....)))))))))----)))....)))))..............-----................ ( -22.40)
>DroEre_CAF1 138079 100 + 1
ACCAAAUACUUAAACUGCGAUUGCGAUGCGCAUACGCCAUGUGUGCCAGCCAUCGUUCUUAUCGCCAUCCCCUCAAUCCUCAACCCCAUCACCAUCAUCC
................(((((.(((((((((((((.....))))))..).))))))....)))))................................... ( -19.70)
>DroYak_CAF1 143079 90 + 1
ACCAAAUACUUAAACUGCGAUUGCGAUGCGCAUACGCCAUGUGUGCCAG----CGUUCUUAUCGCCAUCCUCUCAGCC------CCCAUUACCAUCAUCC
................(((((.(((.((.((((((.....)))))))).----)))....))))).............------................ ( -17.80)
>DroAna_CAF1 128371 81 + 1
ACAAAAUACUUGAAUUGCAAUUUUGUUGCUCAUACGCCAUGUGUGCCA-----CGUAC--GCCGCCAACUUC------------CUUAUCAUCAUCAUCG
..........(((...(((((...)))))......((...((((((..-----.))))--)).)).......------------....)))......... (  -9.30)
>consensus
ACCAAAUACUUAAACUGCGAUUGCGAUGCGCAUACGCCAUGUGUGCCAU____CGUUCUUAUCGCCAUCCUCUCAACC______CCCAUUACCAUCAUCG
................(((((.(((.((.((((((.....)))))))).....)))....)))))................................... (-11.64 = -12.03 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:38 2006