Locus 6046

Sequence ID 2L_DroMel_CAF1
Location 17,027,625 – 17,027,722
Length 97
Max. P 0.687035
window9599

overview

Window 9

Location 17,027,625 – 17,027,722
Length 97
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 80.24
Mean single sequence MFE -26.40
Consensus MFE -13.80
Energy contribution -14.44
Covariance contribution 0.64
Combinations/Pair 1.19
Mean z-score -2.24
Structure conservation index 0.52
SVM decision value 0.32
SVM RNA-class probability 0.687035
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17027625 97 + 22407834
------------AAACACCAGAAUUCAGCAGAUCACUCAAACUCAGACCACACUCAUUGGGUGAACCCCAAAUUCAGAUUGCAU-AUUCCUUUUGG-CUGCUC-GGGUUUUU--
------------.......((((((((((((.((((((((....((......))..))))))))...(((((....((......-..))..)))))-))))).-))))))).-- ( -20.90)
>DroSec_CAF1 135102 99 + 1
------------AAACACCAGAAUUCAGCAGAUCACUCAAACUCAGACCACACUGAUUGGGUGAACCCCAAAUUCAGAUUGCAU-AUUCCUUUUGG-CUGCUC-GGGUUUUUGG
------------.....((((((((((((((.((((((((..((((......))))))))))))...(((((....((......-..))..)))))-))))).-))).)))))) ( -28.20)
>DroSim_CAF1 138184 99 + 1
------------AAACACCAGAAUUCAGCAGAUCACUCAAACUCAGACCACACUGAUUGGGUGAACCCCAAAUUCAGAUUGCAU-AUUCCUUUUGG-CUGCUC-GGGUUUUUGG
------------.....((((((((((((((.((((((((..((((......))))))))))))...(((((....((......-..))..)))))-))))).-))).)))))) ( -28.20)
>DroEre_CAF1 136552 100 + 1
------------AAACACCAGAAUCCAGCAGAUCACUCAAACUCAGACCACACUCAUUGGGUGAACCCCAAAUUCAGAUUGCAU-AUUCCUUUUGGGCUGCUC-GGGUUUUUGG
------------.....((((((((((((((.((((((((....((......))..))))))))..((((((....((......-..))..))))))))))).-))).)))))) ( -29.20)
>DroYak_CAF1 141535 100 + 1
------------AAACACCAGAAUUCCGCAGAUCACUCAAACCCAGACCACACUUACUGGGUGAGCCCCAAAUUCAGAUUGCAU-AUUCCUUUUGGACUGCUC-GGGUUUUUGG
------------.....((((((..((((((....(((..((((((..........)))))))))..(((((....((......-..))..))))).))))..-))..)))))) ( -26.90)
>DroAna_CAF1 127000 104 + 1
AGUAUAAACAAAAAAAAAGUGAUUCGUGCAGUUCUCUGGCACACA---------CGCCCCGAAAACCUCAAAUUCUGAUUGCAUUACUCCUUUGAG-CUGCCUGGGGUUUUCGG
..................(((....((((((....)).)))).))---------)...(((((((((((((((....)))(((...(((....)))-.))).)))))))))))) ( -25.00)
>consensus
____________AAACACCAGAAUUCAGCAGAUCACUCAAACUCAGACCACACUCAUUGGGUGAACCCCAAAUUCAGAUUGCAU_AUUCCUUUUGG_CUGCUC_GGGUUUUUGG
...................((((((((((((.((((((((................))))))))...(((((....((.........))..))))).)))))..)))))))... (-13.80 = -14.44 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:38 2006