Locus 6045

Sequence ID 2L_DroMel_CAF1
Location 17,025,150 – 17,025,254
Length 104
Max. P 0.500000
window9598

overview

Window 8

Location 17,025,150 – 17,025,254
Length 104
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 77.59
Mean single sequence MFE -21.71
Consensus MFE -11.78
Energy contribution -12.17
Covariance contribution 0.39
Combinations/Pair 1.18
Mean z-score -1.64
Structure conservation index 0.54
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17025150 104 + 22407834
UCCAACGAAAACUGUCAAAAGUUUAUUUCGCUCUUCUUUUAUUUUUUGC-AGGGGUAACAAUAAGUUUAACUUAUCCUUGGGUUAUCCCACAGAACUGUGGCAGC
...........((((((..(((((.....((................))-.((((((((.(((((.....)))))......))))))))...))))).)))))). ( -23.99)
>DroPse_CAF1 155846 92 + 1
CACAAAAAAAACUGUCAAAAGUUUCAUUCUCUCUCCGUU----UUUU-----GGCCAACAAUAAGUUAAACUUAUCCCAG----AAGCCACAGAGUUGUGGCAGC
........(((((......)))))...............----((((-----((......(((((.....))))).))))----))(((((......)))))... ( -16.30)
>DroEre_CAF1 134346 100 + 1
UCCAACGAAAGCUGUCAAAAGUUUAUUUCGCAUUUCUUU----UUUUGC-AGCGGUACCAAUAAGUUUAACUUAUCCUUGGGUUAUCCCACAGAACUGUGGCAGC
..........((((((.............(((.......----...)))-.(((((.....((((.....))))((..((((....))))..))))))))))))) ( -22.60)
>DroYak_CAF1 139298 100 + 1
UCCAAUGAAAACUGUCAAAAGUUUAUUUCGCUCUUCUUU----UUUUGC-AGGGGUAACAAUAAGUUUAACUUAUCCUUGGGUUAUCCCACAGAGCUGUGGCAGC
...........((((((..(((((.....((........----....))-.((((((((.(((((.....)))))......))))))))...))))).)))))). ( -24.30)
>DroAna_CAF1 124350 90 + 1
UCCAUAGGAAACUGUCAAAAGUUU----------CCUUU----UUUUGUUAGGGGU-ACAAUAAGUUAAACUUAUCCCGGGGAUAUCCCACAGAACUGUGGCGGC
.((((((((((((......)))))----------))...----((((((..(((((-(.....((.....)))))))).(((....))))))))).))))).... ( -26.80)
>DroPer_CAF1 165232 91 + 1
CACAAAA-AAACUGUCAAAAGUUUCAUUCUCUCUCCGUU----UUUU-----GGCCAACAAUAAGUUAAACUUAUCCCAG----AAGCCACAGAGUUGUGGCAGC
.......-(((((......)))))...............----((((-----((......(((((.....))))).))))----))(((((......)))))... ( -16.30)
>consensus
UCCAAAGAAAACUGUCAAAAGUUUAUUUCGCUCUCCUUU____UUUUGC_AGGGGUAACAAUAAGUUAAACUUAUCCCUGGGUUAUCCCACAGAACUGUGGCAGC
...........((((((..(((((............................(((.....(((((.....)))))))).(((....)))...))))).)))))). (-11.78 = -12.17 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:36 2006