Locus 6043

Sequence ID 2L_DroMel_CAF1
Location 17,016,420 – 17,016,525
Length 105
Max. P 0.538889
window9594

overview

Window 4

Location 17,016,420 – 17,016,525
Length 105
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 82.60
Mean single sequence MFE -22.71
Consensus MFE -18.99
Energy contribution -18.85
Covariance contribution -0.14
Combinations/Pair 1.06
Mean z-score -1.31
Structure conservation index 0.84
SVM decision value 0.01
SVM RNA-class probability 0.538889
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17016420 105 - 22407834
CGAGCAGCGACAGCUGCUUAAAAAUGUAAGCUCAGUUGCUUCUAGAUUAAGUUUGC-CCUGUUCCUGUUCCAUUUAACAUUUACUCCAUUAGAUUCUCGAACGUAC
.((((((.(((((..((((((...((.((((......)))).))..))))))....-.))))).)))))).................................... ( -21.10)
>DroSec_CAF1 124141 105 - 1
CGAGCAGCGACAGCUGCUUAAAAAUGUAAGCUCGGUUGCUUCUAGAUUAAGUUUGC-UCUGUUCCUGUUCCAUUUUACAUUUACUCCUUUAGAUUCUCGAACGUAC
.(((((((....)))))))......(((((((..(((.......)))..)))))))-...((((..((........))(((((......)))))....)))).... ( -22.20)
>DroSim_CAF1 127135 105 - 1
CGAGCAGCGACAGCUGCUUAAAAAUGUAAGCUCGGUUGCUUCUAGAUUAAGUUUGC-UCUGUUCCUGUUCCAUUUUACAUUUACUCCUUUACAUUCUCGAACGUAC
.((((((.(((((..((((((...((.((((......)))).))..))))))....-.))))).)))))).................................... ( -21.10)
>DroEre_CAF1 125986 94 - 1
CGAGCAGCGACAGCUGCUUAAAAAUGUAAGCUCGGUUGCUUCUAGAUUAAGUUUGC-UCUGUUCCUGUACCAUUUUACUUGUGCUCCCUUGGAUC-----------
.(((((((....)))))))......(((((((..(((.......)))..)))))))-.....(((.((((..........))))......)))..----------- ( -23.10)
>DroYak_CAF1 127017 93 - 1
CGAGCAGCGACAGCUGCUUAAAAAUGUAAGCUCGGUUGCUUCUAGAUUAAGUUUGC-UCU-UUCCCGCUCCAUUUUACUUUUACUCCUUUGGAUU-----------
.(((((((....)))))))......(((((((..(((.......)))..)))))))-...-.......((((.................))))..----------- ( -22.43)
>DroAna_CAF1 115454 97 - 1
CAAGCAGCGACAGCUGCUUAAAAAUGUAAGCUCGGUUGCUUCUAGAUUAAGUUUGCCUCUGUUUCUAUGCCAGUUUC-------UUCUUCA--AGCAAGAGAGUAC
.(((((((....)))))))..........((((..((((((..(((..((..(.((............)).)..)).-------.)))..)--)))))..)))).. ( -26.30)
>consensus
CGAGCAGCGACAGCUGCUUAAAAAUGUAAGCUCGGUUGCUUCUAGAUUAAGUUUGC_UCUGUUCCUGUUCCAUUUUACAUUUACUCCUUUAGAUUCUCGAACGUAC
.(((((((....)))))))......(((((((..(((.......)))..))))))).................................................. (-18.99 = -18.85 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:33 2006