Locus 6041

Sequence ID 2L_DroMel_CAF1
Location 17,010,383 – 17,010,479
Length 96
Max. P 0.548930
window9591

overview

Window 1

Location 17,010,383 – 17,010,479
Length 96
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 84.47
Mean single sequence MFE -28.53
Consensus MFE -19.79
Energy contribution -20.08
Covariance contribution 0.29
Combinations/Pair 1.17
Mean z-score -2.27
Structure conservation index 0.69
SVM decision value 0.03
SVM RNA-class probability 0.548930
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17010383 96 + 22407834
GAAUUGCUGUGCUUUCUGCGGACCGAGCCUCACAACACAAAAACACGUGUUGGCCUUGUUAGCAGAAAAAGCAACGCACACGUGCACUGCAAAAC-------G
...((((.(((((((((((.(((...(((....(((((........))))))))...))).))))))).....(((....))))))).))))...-------. ( -30.00)
>DroSec_CAF1 118069 96 + 1
GAAUUGCUGUGCUUUCUGUGGAGCGAGCCUCACAACACAAAAACACGUGUUGGCCUUGUUAGCAGCAAAAGCAACACACAUGUGCACUGCAAAAC-------G
...((((.((((....((((.((((((.....((((((........))))))..))))))....((....))....))))...)))).))))...-------. ( -27.70)
>DroSim_CAF1 121028 96 + 1
GAAUUGCUGUGCUUUCUGUGGAGCGAGCCUCACAACACAAAAACACGUGUUGGCCUUGUUAGCAGCAAAAGCAACGCACAUGUGCACUGCAAAAC-------G
...((((.(((((((((((..((((((.....((((((........))))))..)))))).))))..)))))...(((....))))).))))...-------. ( -29.30)
>DroEre_CAF1 120148 86 + 1
GAAUUGCUGUGCUUUCUGUGCACCGAGCCUCACAACACAA-AACACGUGUUGGCCUUGUUAG---------CAACGCACACGUGCACUGCGAAAA-------G
...((((.((((....(((((...........((((((..-.....))))))((.......)---------)...)))))...)))).))))...-------. ( -25.60)
>DroYak_CAF1 120461 96 + 1
GAAUUGCUGUGCUUUCUGUGCACCGAGCCUCACAACACAAAAACACGUGUUGGCCUUGUUAGCAGCAAUAGCAACGCACACGUGCACUGCAAAAA-------G
...((((.((((....(((((...........((((((........))))))...((((((.......)))))).)))))...)))).))))...-------. ( -28.70)
>DroAna_CAF1 110686 97 + 1
GAAUUGCUGUGCUUUGUGGGGCACGGCC--CA-AACACAAAAACAUGUGUUGGUCUUGUUACCAGCCAAAGCA---CACACAUGCACUGCGAAAAAUCAAACA
...((((.((((..(((((((((.((((--..-((((((......)))))))))).)))..)).((....)).---..)))).)))).))))........... ( -29.90)
>consensus
GAAUUGCUGUGCUUUCUGUGGACCGAGCCUCACAACACAAAAACACGUGUUGGCCUUGUUAGCAGCAAAAGCAACGCACACGUGCACUGCAAAAA_______G
...((((.((((....((((...((((.....((((((........))))))..))))...((.......))..)))).....)))).))))........... (-19.79 = -20.08 +   0.29)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:30 2006