Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,814,874 – 1,814,994 |
Length | 120 |
Max. P | 0.896566 |
Location | 1,814,874 – 1,814,994 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.01 |
Mean single sequence MFE | -20.06 |
Consensus MFE | -14.44 |
Energy contribution | -15.00 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -2.00 |
Structure conservation index | 0.72 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.896566 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1814874 120 - 22407834 GUUUUAUGGUUUUGCACUUAGCAAUUAACGAGUUUACUUUUUUUAGUGCUACUCCCAGUGCCCGCAUCAAGUGGACAUAUCCUCCUCCACCUCUCCACUCCCUCCAGCACUCUCUCCACU ......(((..((((.....)))).....((((.((((......))))..)))))))((((........((((((..................)))))).......)))).......... ( -20.73) >DroSim_CAF1 12523 101 - 1 GUUUUAUGGUUUUGCACUUAGCAAUUAACGAGUUUACUUUUUUUAGUGCUACUCCCAGUGCCCGCAUCAAGUGGACAUAUCCUCCUCCACUCCUCCACUGC------------------- ......(((....((((((((((...((.(((....))).))....))))).....)))))........((((((..........))))))...)))....------------------- ( -18.60) >DroPer_CAF1 26978 115 - 1 GUUUUAUGGUUUUGCACUUAGCAAUUAACGAGUUUACUUU-UUUAGUGCUGCUCCCAGAACCCGCAUGAAGUGGACAUCUCCUCCUCUUCC-AUCCUCAUCCUCAACCACAU---CCCAU .......(((((((....(((((...((.(((....))).-))...)))))....))))))).....((((.(((.......))).)))).-....................---..... ( -20.60) >DroEre_CAF1 23403 111 - 1 GUUUUAUGCUUUUGCACUUAGCAAUUAACGAGUUUACUUUUUUUAGUGCUACUCCCAGUGCCCGCAUCAAGUGGACAUAUCCUCCUCCACUUUUCCAC---------CACUCCCUCCACU .....((((....((((((((((...((.(((....))).))....))))).....)))))..)))).(((((((..........)))))))......---------............. ( -20.30) >consensus GUUUUAUGGUUUUGCACUUAGCAAUUAACGAGUUUACUUUUUUUAGUGCUACUCCCAGUGCCCGCAUCAAGUGGACAUAUCCUCCUCCACCUCUCCACU_C______CACUC___CCACU ......(((..((((.....)))).....((((.((((......))))..)))))))(((.((((.....)))).))).......................................... (-14.44 = -15.00 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:46 2006