Locus 6037

Sequence ID 2L_DroMel_CAF1
Location 17,004,265 – 17,004,376
Length 111
Max. P 0.758085
window9584

overview

Window 4

Location 17,004,265 – 17,004,376
Length 111
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 86.37
Mean single sequence MFE -39.00
Consensus MFE -27.40
Energy contribution -29.80
Covariance contribution 2.40
Combinations/Pair 1.12
Mean z-score -2.06
Structure conservation index 0.70
SVM decision value 0.49
SVM RNA-class probability 0.758085
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17004265 111 - 22407834
AUCAUCAAAGCCUGGCCAGCGAAUGCUGGCUGAGCGCUGUGAAAAGUGCGUUGAAGUCUUGCCAUCGCUGGGAGUUCGAAAAGUGCCGCCUGGCGAACUCCAAUAGCCAGA-----
...........(((((((((((..((.((((..(((((......))))).....))))..))..))))))((((((((...((......))..))))))))....))))).----- ( -45.80)
>DroSec_CAF1 111856 111 - 1
AUCAUCAAAGCCUGGCCAGCGGAUGCUGGCUCAGCGCUGUGAAAAGUGCGUUGAAAUAUUGCCAUCGCUGGGAGUUCGAAAAGUGCCGCCUGGCGAACUCCAAUAGCCAGA-----
...........(((((((((((....(((((((((((..(....)..)))))))......))))))))))((((((((...((......))..))))))))....))))).----- ( -44.60)
>DroSim_CAF1 114467 111 - 1
AUCAUCAAAGCCUGGCCAGCGGAUGCUGGCUCAACGCUGUGAAAAAUGCGUUGAAAUAUUGCCAUCGCUGGGAGUUCGAAAAGUGCCGCCUGGCGAACUCCAAUAACCAGA-----
...........((((.((((((....(((((((((((..........)))))))......))))))))))((((((((...((......))..)))))))).....)))).----- ( -40.80)
>DroEre_CAF1 113923 104 - 1
AUCAUCAAAACCUGGCCAUCGGAUGCUGGCUCAGCGCCGUGAAAAGUGCGUUGAAGUAUUGGCAUCGCUCGGAGCUCGAAAAGUGCUGCCUGCCAAACUCUAAA------------
............((((.....((((((.((((((((((.......).)))))).)))...))))))....(((((.(.....).))).)).)))).........------------ ( -31.00)
>DroYak_CAF1 114163 116 - 1
AUCAUCAAAACCUGACCAUCGGCUGCUGGCUCAGCGCUGUGAAAAGUGCGUUGAAGUAUUGGCAUCGCUGGGAGUUCGGAAAGUGCUGCCUGCAAAACUCUAAUAGUCAGACGUAG
...........(((((...((((((((.(((((((((..(....)..)))))).)))...))))..))))((((((.......(((.....))).))))))....)))))...... ( -32.80)
>consensus
AUCAUCAAAGCCUGGCCAGCGGAUGCUGGCUCAGCGCUGUGAAAAGUGCGUUGAAGUAUUGCCAUCGCUGGGAGUUCGAAAAGUGCCGCCUGGCGAACUCCAAUAGCCAGA_____
...........(((((((((((.(((..(((((((((..(....)..)))))).)))...).))))))))((((((((...((......))..))))))))....)))))...... (-27.40 = -29.80 +   2.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:23 2006