Locus 6034

Sequence ID 2L_DroMel_CAF1
Location 16,999,467 – 16,999,561
Length 94
Max. P 0.950889
window9579

overview

Window 9

Location 16,999,467 – 16,999,561
Length 94
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 73.08
Mean single sequence MFE -23.05
Consensus MFE -14.65
Energy contribution -15.85
Covariance contribution 1.20
Combinations/Pair 1.22
Mean z-score -1.73
Structure conservation index 0.64
SVM decision value 1.41
SVM RNA-class probability 0.950889
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16999467 94 - 22407834
AUGAAGAACACUUCGUAUAUUCUUU--CCACAUACCCAACAUUGUAAUCUGGGCCCGUCAAU-CUGACUUCAGUGAGAUUGGUCCAGAGGGAUAAAC-------
((((((....)))))).......((--(((((..........)))..((((((((.(((...-(((....)))...))).)))))))))))).....------- ( -26.90)
>DroSec_CAF1 106638 94 - 1
UUAAAGAACAUUUCGUGUUUUCUUU--CCACAUACCCAACAUUAUAAUCUGGGCCCGUCAAU-CUAACUUCAGUGUGAUUGGUCCAGAGGGAUAAAC-------
....(((((((...)))))))....--.......(((..........((((((((.((((..-((......))..)))).)))))))))))......------- ( -22.30)
>DroSim_CAF1 108593 94 - 1
UUAAAGAACAUUUCGUGUUUUCUAU--CCACAUACCCAACAUUAUAAUCUGGGCCCGUCAAU-CUAACUUCAGUGUGAUUGGUCCAGAGGGAUAAGC-------
....(((((((...))))))).(((--((..................((((((((.((((..-((......))..)))).)))))))).)))))...------- ( -23.31)
>DroEre_CAF1 109291 92 - 1
GCAAAGAACACUUUGUACCCCCCUU--CCGCAUACCCAAAG--AUAAUCUGGUCCCGUCAAU-CUGGCUUCAGUGUGAUUGGUCCAGAGGGAUAAGC-------
((((((....)))))).........--..((.(((((....--....(((((.((.((((..-(((....)))..)))).)).)))))))).)).))------- ( -24.70)
>DroYak_CAF1 109471 94 - 1
UUACAGAACACUUUUUAUCUUAUUU--CGGCAGACCCAACGUUAUAAUCUGGGCUCGUCAAU-CCGACUUUAGUGUGAUUGGUCCAGAGGGAUAAGC-------
..................(((((..--(((.....))..........((((((((.((((..-.(.......)..)))).)))))))))..))))).------- ( -22.30)
>DroAna_CAF1 98260 92 - 1
------CAUAUUCUGUAUAAUAGUUCCCCACAUAUCCCCCGUU------UGAGGCUGUCAACACUGACAUCUCUGUAAUUGCUCCAAAGGGAUAAUUCCGGAAG
------.................((((.....((((((.....------.((((.(((((....))))))))).((....))......)))))).....)))). ( -18.80)
>consensus
UUAAAGAACACUUCGUAUAUUCUUU__CCACAUACCCAACAUUAUAAUCUGGGCCCGUCAAU_CUGACUUCAGUGUGAUUGGUCCAGAGGGAUAAGC_______
..................................(((..........((((((((.((((...(((....)))..)))).)))))))))))............. (-14.65 = -15.85 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:18 2006