Locus 6033

Sequence ID 2L_DroMel_CAF1
Location 16,997,079 – 16,997,171
Length 92
Max. P 0.771642
window9578

overview

Window 8

Location 16,997,079 – 16,997,171
Length 92
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 86.10
Mean single sequence MFE -21.95
Consensus MFE -14.85
Energy contribution -15.73
Covariance contribution 0.87
Combinations/Pair 1.11
Mean z-score -2.04
Structure conservation index 0.68
SVM decision value 0.53
SVM RNA-class probability 0.771642
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16997079 92 + 22407834
UUUCCAUCCUCCCAUGUUGCACUCGAUGCAGCACUUUCCUCCGUCCCUUGGUAUCUUGGUAUUACCACACUUAUCGUUUAAGGAGGGCACCG
..............(((((((.....)))))))...((((((......(((((...(((.....)))....))))).....))))))..... ( -22.30)
>DroSec_CAF1 104283 83 + 1
UUGCC-UCCUCCAAUGUUGCACUCGAUGCAGCACUUUCCUCCAUCCCUUG--------GUAUUAACACACUUAUCGUUUGAGGAGGGCACCG
.((((-(((((.(((((((((.....))))))........(((.....))--------)................))).))))).))))... ( -23.10)
>DroSim_CAF1 106230 83 + 1
UUGCC-UCCUCCAAUGUUGCACUCGAUGCAGCACUUUCCUCCAUCCCUUG--------GAAUUACCACACUUAUCGUUUGAGGAGGGCACCG
.((((-(((((.(((((((((.....)))))).......((((.....))--------))...............))).))))).))))... ( -25.20)
>DroYak_CAF1 107131 82 + 1
UUGCC-UCCUCUAAUGUUGCACUUGAUGCGCCACUUUCCUCCG-CCCGUA--------GUAUUACCACACUUAUCGUUUGGGGAGUGCACCG
.((((-(((.....((.((((.....)))).)).......(((-..((.(--------((........)))...))..))))))).)))... ( -17.20)
>consensus
UUGCC_UCCUCCAAUGUUGCACUCGAUGCAGCACUUUCCUCCAUCCCUUG________GUAUUACCACACUUAUCGUUUGAGGAGGGCACCG
.((((.(((((...(((((((.....))))))).........................((......))...........))))).))))... (-14.85 = -15.73 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:17 2006