| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,995,197 – 16,995,304 |
| Length | 107 |
| Max. P | 0.650119 |
| Location | 16,995,197 – 16,995,304 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 87.76 |
| Mean single sequence MFE | -24.35 |
| Consensus MFE | -20.27 |
| Energy contribution | -20.93 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650119 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16995197 107 + 22407834 GCUUUCCCACCCUUCCAUUAUGUUUUCCACCGAACGCCCCCAUUAAAUGUGAUUAACAUUAAAUCAUAUGGACGAGGGGGCACGGUCAUAUCUCUGACAAACAC------CUG ....................(((((..........((((((.....((((((((.......))))))))......))))))...((((......))))))))).------... ( -25.50) >DroSec_CAF1 102419 112 + 1 GCUUUCCCUCCCUUCCAUUCUUUUUUUCACCGGACGCCCCCAUUAAAUGUGAUUAACAUUAAAUCAUAUGGACGAGG-GGCACGGUCAUAUCUCUGACAAACACCUGUACCUG ...............................(((((((((......((((((((.......))))))))......))-)))...((((......))))........)).)).. ( -23.60) >DroSim_CAF1 104398 107 + 1 GCUUUCCCUCCCUUCCAUUCUUUUUUCCACCGCACGCCCCCAUUAAAUGUGAUUAACAUUAAAUCAUAUGGACGAGGGGGCACGGUCAUAUCUCUGACAAACAC------CUG ...................................((((((.....((((((((.......))))))))......))))))...((((......))))......------... ( -23.80) >DroEre_CAF1 105155 107 + 1 GCUUUCCCGCCCUGCCACUCGUUUUUCUACCGGACGCCCCCAUUAAAUGUGAUUAACAUUAAAUCAUAUGGACGAGGGGGCACGGUCAUAUCUCUGACAAACAC------CUG ((......))..........((((.((.((((...((((((.....((((((((.......))))))))......)))))).)))).........)).))))..------... ( -26.20) >DroYak_CAF1 105193 107 + 1 CCUUUUCCUCCCUUCCAUUCCUUUUUCUACCGGACGCCCCCAUUAAAUGUGAUUAACAUUAAAUCAUAUGGACGAGGGGGCACGGUCAUAUCUCUGACAAACAC------CUG ...............................((..((((((.....((((((((.......))))))))......))))))...((((......)))).....)------).. ( -25.60) >DroAna_CAF1 94135 106 + 1 GCUGCUCUCCCGCUCCAUUUUAUCUCCUUCCCAGGGCCCCCCUUAAAUGUGAUUAACAUUAAAUCAUAUAGAUGAGG-GGCACGGUCAUAUCUCUAACAAACAC------CUG (..((......))..)..................(((((((((((.((((((((.......))))))))...)))))-))...)))).................------... ( -21.40) >consensus GCUUUCCCUCCCUUCCAUUCUUUUUUCCACCGGACGCCCCCAUUAAAUGUGAUUAACAUUAAAUCAUAUGGACGAGGGGGCACGGUCAUAUCUCUGACAAACAC______CUG ............................((((...((((((.....((((((((.......))))))))......)))))).))))........................... (-20.27 = -20.93 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:16 2006