Locus 6031

Sequence ID 2L_DroMel_CAF1
Location 16,993,957 – 16,994,054
Length 97
Max. P 0.986157
window9576

overview

Window 6

Location 16,993,957 – 16,994,054
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 94.75
Mean single sequence MFE -21.70
Consensus MFE -19.56
Energy contribution -19.40
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.75
Structure conservation index 0.90
SVM decision value 2.03
SVM RNA-class probability 0.986157
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16993957 97 + 22407834
ACUAGCAAUAAUUGGUAAAAGUCAGGGCUUCAGCUGGCCAACAGCACCAGAAGAGCCAACGACUGCACAACAAGCAGCGAAAUCAAAACGGAUAUAU
...........(((((.........(((((...((((.........))))..)))))..((.((((.......))))))..)))))........... ( -21.30)
>DroSec_CAF1 101227 94 + 1
ACUAGCAAUAAUUGGUAAAAGUCAGGGCUUCAGCUGGGCAACAGCGCCAG---AGCCAACGACUGCAAAACAAGCAGCGAAAUCAAAACGGAUAUAU
...........(((((.........(((((..((((.....))))....)---))))..((.((((.......))))))..)))))........... ( -22.80)
>DroSim_CAF1 103182 94 + 1
ACUAGCAAUAAUUGGUAAAAGUCAGGGCUUCGGCUGGCCAACAGCACCAG---AGCCAACGACUGCAAAACAAGCAGCGAAAUCAAAACGGAUAUGU
...........(((((.........(((((..((((.....))))....)---))))..((.((((.......))))))..)))))........... ( -22.80)
>DroEre_CAF1 103974 94 + 1
ACUAGCAAUAAUUGGUAAAAGUCAGGGCUUCAGCUGGCCAACAGCACCAG---UGCCAACGACUGCAAAACAAGCGGCGAAAUCAAAACGGAAAUAU
..........((((((..((((....))))..((((.....)))))))))---).....((.((((.......)))))).................. ( -19.90)
>DroYak_CAF1 103978 94 + 1
ACUAGCAAUAAUUGGUAAAAGUCAGGGCUUCAGCUGGCCAACAGCACGAG---AGCCAACGACUGCAAAACAAGCAGCGAAAUCAAAACGGAAAUAU
...........(((((.........(((((..((((.....))))....)---))))..((.((((.......))))))..)))))........... ( -21.70)
>consensus
ACUAGCAAUAAUUGGUAAAAGUCAGGGCUUCAGCUGGCCAACAGCACCAG___AGCCAACGACUGCAAAACAAGCAGCGAAAUCAAAACGGAUAUAU
...........(((((..((((....))))..((((.....)))).........)))))((.((((.......)))))).................. (-19.56 = -19.40 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:15 2006