Locus 6029

Sequence ID 2L_DroMel_CAF1
Location 16,991,558 – 16,991,667
Length 109
Max. P 0.769790
window9573

overview

Window 3

Location 16,991,558 – 16,991,667
Length 109
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.45
Mean single sequence MFE -21.15
Consensus MFE -14.63
Energy contribution -14.72
Covariance contribution 0.08
Combinations/Pair 1.05
Mean z-score -1.89
Structure conservation index 0.69
SVM decision value 0.53
SVM RNA-class probability 0.769790
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16991558 109 - 22407834
UCCGGAUUCUGAGUCUCCGUCCGGGCGUAAAUCAAAGUGAAAAGCGUGCUAAUUGCAUUAAAAGCAUAUAAACAAAAUGCA--AUGCAAGUGGCUG--UGAUAAAUAUAAAAA-------
.((((((...........))))))((((...((.....))...))))((((.(((((((....((((.........)))))--)))))).))))..--...............------- ( -24.00)
>DroPse_CAF1 109034 100 - 1
CCC---------UCCUCAGUCCGGGCGUAAAUCAAAGUGAAAAGCGUGCUAAUUGCAUUAAAAGCAUAUAAACAAAAUGCA--AUGCAAGUGGCUG--UGAUAAAUAUAAAAA-------
...---------..(.(((((((.((((...((.....))...)))).)...(((((((....((((.........)))))--))))))).)))))--.).............------- ( -19.50)
>DroGri_CAF1 108126 97 - 1
------------GACGACGCCUGGGCUUAAAUCAAAGUGAAAAGCGUGCUAAUUGCAUUAAAAGCAUAU--ACAAAAUGCAAAAUGCAAGUGGCUG--UGAUAAAUAAAAAUU-------
------------....((((....((((......)))).....))))((((.(((((((....((((..--.....))))..))))))).))))..--...............------- ( -19.60)
>DroWil_CAF1 152792 102 - 1
A---------GUGGCCUGGCCUGGGCGUAAAUCAAAGUGAAAAGCGUGCUAAUUGCAUUAAAAGCAUAUAAACAAAAUGCA--AUGCAAGUUCCUGUGUGAUAAAAAAAAAAA-------
.---------...((((.....))))....((((.((.(((..((((((.....)))).....((((.........)))).--..))...)))))...))))...........------- ( -19.10)
>DroMoj_CAF1 111137 101 - 1
---------------GGCGCCUGGGCGUAAAUCAAAGUGAAAAGCGUGCUAAUUGCAUUAAAAGCAUAUAAACAAAAUGCA--AUGCAAGUGGCUG--UGAUAAUAUAUAUAUAUAUAGU
---------------.((((....))))..((((..((.....))..((((.(((((((....((((.........)))))--)))))).))))..--))))..(((((....))))).. ( -21.20)
>DroPer_CAF1 118813 100 - 1
CCC---------UCCACAGUCCGGGCGUAAAUCAAAGUGAAAAGCGUGCUAAUUGCAUUAAAAGCAUAUAAACAAAAUGCA--AUGCAAGUGGCUG--UGAUAAAUAUAAAAA-------
...---------..(((((((((.((((...((.....))...)))).)...(((((((....((((.........)))))--))))))).)))))--)).............------- ( -23.50)
>consensus
____________GCCGCCGCCCGGGCGUAAAUCAAAGUGAAAAGCGUGCUAAUUGCAUUAAAAGCAUAUAAACAAAAUGCA__AUGCAAGUGGCUG__UGAUAAAUAAAAAAA_______
..................((....))....((((..((.....))..((((.((((((.....((((.........))))...)))))).))))....)))).................. (-14.63 = -14.72 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:13 2006