Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,988,419 – 16,988,526 |
Length | 107 |
Max. P | 0.999579 |
Location | 16,988,419 – 16,988,526 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 91.50 |
Mean single sequence MFE | -32.96 |
Consensus MFE | -27.42 |
Energy contribution | -28.10 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.14 |
Mean z-score | -3.14 |
Structure conservation index | 0.83 |
SVM decision value | 3.44 |
SVM RNA-class probability | 0.999215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16988419 107 + 22407834 GUAGAUGACAAGAUUAAAGUUAACUCAAUCAAAAUUGAGAUACCAUUUCCAAUUUUGUUCGAGUACAUCAGCAACAGUUUUGGCCACUGUUGUGGCCAACCUUCCGC ((.((((....(((....))).((((...((((((((.((.......))))))))))...)))).)))).)).......((((((((....))))))))........ ( -29.70) >DroSec_CAF1 95675 107 + 1 GUAGAUCAGAAGAUUAAAGUUAACUCAAUCAGAAUUGGGAUACCAUUUCCAAUUUUGUUCGAGUACAUCAGCAACAGUUGUGGCCACUGUUGUGGCCAACCUUCCGC ........((((..........((((...(((((((((((......)))))))))))...))))....((((....))))(((((((....)))))))..))))... ( -34.60) >DroSim_CAF1 97615 107 + 1 GUAGAUCAGCAGAUUAAAGUUAACUCAAUCAGAAUUGGGAUACCAUUUCCAAUUUUGUUCGAGUACAUCAGCAACAGUUGUGGCCACUGUUGUGGCCAACCUUCCGC ...((((....)))).......((((...(((((((((((......)))))))))))...))))....((((....))))(((((((....)))))))......... ( -33.00) >DroEre_CAF1 98425 107 + 1 GUGGAUCGGAAGAUUAAACUUAACUCAAGCCAAAUUGAGAUACCAUUACCAAUUUUGUUCGAGUACAUCAGCAACAGUUGGGGCCGCUGUUGUGGCCAACCCACCGC (((((((....))).........(((((......))))).........(((((((((((.((.....))))))).))))))((((((....))))))...))))... ( -33.80) >DroYak_CAF1 98437 107 + 1 GUGGAUCAGAAGAUUAAAGUUAACUCAAUCAAAAUUGGAGUACCAUUCCCAGUUUUGUUCGAGUACAUCAGCAACAGUUGGGGCCACUAUUGUGGCCAACCUUCCGC (((((.................((((...(((((((((.(.......))))))))))...))))...(((((....)))))((((((....)))))).....))))) ( -33.70) >consensus GUAGAUCAGAAGAUUAAAGUUAACUCAAUCAAAAUUGGGAUACCAUUUCCAAUUUUGUUCGAGUACAUCAGCAACAGUUGUGGCCACUGUUGUGGCCAACCUUCCGC ...((((....)))).......((((...(((((((((((......)))))))))))...))))....((((....)))).((((((....)))))).......... (-27.42 = -28.10 + 0.68)
Location | 16,988,419 – 16,988,526 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 91.50 |
Mean single sequence MFE | -32.58 |
Consensus MFE | -29.18 |
Energy contribution | -30.42 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.10 |
Mean z-score | -2.51 |
Structure conservation index | 0.90 |
SVM decision value | 3.74 |
SVM RNA-class probability | 0.999579 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16988419 107 - 22407834 GCGGAAGGUUGGCCACAACAGUGGCCAAAACUGUUGCUGAUGUACUCGAACAAAAUUGGAAAUGGUAUCUCAAUUUUGAUUGAGUUAACUUUAAUCUUGUCAUCUAC ((((.((.((((((((....))))))))..)).)))).((((.((((((.((((((((((.......)).)))))))).))))))...............))))... ( -32.59) >DroSec_CAF1 95675 107 - 1 GCGGAAGGUUGGCCACAACAGUGGCCACAACUGUUGCUGAUGUACUCGAACAAAAUUGGAAAUGGUAUCCCAAUUCUGAUUGAGUUAACUUUAAUCUUCUGAUCUAC .(((((((((((((((....)))))).................((((((.((.((((((..........)))))).)).)))))).......)))))))))...... ( -33.50) >DroSim_CAF1 97615 107 - 1 GCGGAAGGUUGGCCACAACAGUGGCCACAACUGUUGCUGAUGUACUCGAACAAAAUUGGAAAUGGUAUCCCAAUUCUGAUUGAGUUAACUUUAAUCUGCUGAUCUAC (((((.((((((((((....)))))))..))).....(((.((((((((.((.((((((..........)))))).)).))))))..)).))).)))))........ ( -31.80) >DroEre_CAF1 98425 107 - 1 GCGGUGGGUUGGCCACAACAGCGGCCCCAACUGUUGCUGAUGUACUCGAACAAAAUUGGUAAUGGUAUCUCAAUUUGGCUUGAGUUAAGUUUAAUCUUCCGAUCCAC ...(((((((((..(((.(((((((.......))))))).)))((((((.(.(((((((..........))))))).).)))))).............))))))))) ( -31.20) >DroYak_CAF1 98437 107 - 1 GCGGAAGGUUGGCCACAAUAGUGGCCCCAACUGUUGCUGAUGUACUCGAACAAAACUGGGAAUGGUACUCCAAUUUUGAUUGAGUUAACUUUAAUCUUCUGAUCCAC .(((((((((((((((....)))))).................((((((.(((((.((((........)))).))))).)))))).......)))))))))...... ( -33.80) >consensus GCGGAAGGUUGGCCACAACAGUGGCCACAACUGUUGCUGAUGUACUCGAACAAAAUUGGAAAUGGUAUCCCAAUUUUGAUUGAGUUAACUUUAAUCUUCUGAUCUAC .(((((((((((((((....)))))).................((((((.(((((((((..........))))))))).)))))).......)))))))))...... (-29.18 = -30.42 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:12 2006