Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,985,511 – 16,985,640 |
Length | 129 |
Max. P | 0.907848 |
Location | 16,985,511 – 16,985,605 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 96.60 |
Mean single sequence MFE | -20.57 |
Consensus MFE | -19.24 |
Energy contribution | -19.48 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.40 |
Structure conservation index | 0.94 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.907848 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16985511 94 - 22407834 CUAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAUGAGGACAUGCAAAUGCAGUUUAAGCUCAA .......((((((...(((....)))..)))))).((..((((((....(((((((......)))).)))..(((....))))))))))).... ( -21.60) >DroSec_CAF1 93151 94 - 1 CUAUACCCGGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAUGAGGACAUGCAAAUGCAGUUUAAGCUCAA .........(((....))).((((((....((((((.(((.............))))))))).....((((.(((....))))))).)))))). ( -20.92) >DroSim_CAF1 95113 94 - 1 CUAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAUGAGGACAUGCAAAUGCAGUUUAAGCUCAA .......((((((...(((....)))..)))))).((..((((((....(((((((......)))).)))..(((....))))))))))).... ( -21.60) >DroEre_CAF1 95789 93 - 1 CCAUUCCCAGCUGUUAAGCGUGCGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAAGAGGAAAUGCAAAUGCAGUUU-AGCUCAA ............(((((((.(((((........)))))..........((((...((........)))))).(((....)))))))-))).... ( -17.60) >DroYak_CAF1 95711 94 - 1 CCAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAAGAGGACAUGCAAAUGCAGUUUAAGCUCAA .........(((....))).((((((....((((((.(((.............))))))))).....((((.(((....))))))).)))))). ( -21.12) >consensus CUAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAACAAUGAGGACAUGCAAAUGCAGUUUAAGCUCAA .......((((((...(((....)))..)))))).((............(((((((......)))).)))..(((....)))......)).... (-19.24 = -19.48 + 0.24)
Location | 16,985,544 – 16,985,640 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -21.35 |
Consensus MFE | -20.80 |
Energy contribution | -20.48 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.08 |
Mean z-score | -1.24 |
Structure conservation index | 0.97 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16985544 96 - 22407834 UGAUGCUUAAUUGGGUUUUAGUUUUCGGCCAAAUCCUAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAA ((((..((((((((((..(((..((......))..))).)))((((((...(((....)))..))))))..))))))))))).............. ( -22.20) >DroSec_CAF1 93184 96 - 1 UGAUGCUUAAUUGGGUUUUAGUUUUCGGCCAAAUUCUAUACCCGGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAA ...(((.....((((..((.((((...((.............((((((...(((....)))..)))))).))....)))).))..))))...))). ( -21.24) >DroSim_CAF1 95146 96 - 1 UGAUGCUUAAUUGGGUUUUAGUUUUCGGCCAAAUUCUAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAA ...(((.....((((..((.((((...((.............((((((...(((....)))..)))))).))....)))).))..))))...))). ( -22.04) >DroEre_CAF1 95821 96 - 1 UGAUGCUUAAUUGGGUUUUAGUUUUCAGCCAAAUUCCAUUCCCAGCUGUUAAGCGUGCGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAA ...(((.....((((..((.((((.((((...............))))..)))).(((((........)))))........))..))))...))). ( -20.16) >DroYak_CAF1 95744 96 - 1 UGAUGUUUAAUUGGGUUUUAGUUUUCAGCCAAAUUCCAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAA ....(((((((((((((.........))))............((((((...(((....)))..))))))..)))))))))................ ( -21.10) >consensus UGAUGCUUAAUUGGGUUUUAGUUUUCGGCCAAAUUCUAUACCCAGCUGUUAAGCGUGAGCUAUCAGUUGUGCAAUUAAAUCAAUUCCCAUUCGCAA ...(((.....((((..((.((((...((.............((((((...(((....)))..)))))).))....)))).))..))))...))). (-20.80 = -20.48 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:10 2006