Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,985,323 – 16,985,413 |
Length | 90 |
Max. P | 0.868946 |
Location | 16,985,323 – 16,985,413 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 89.67 |
Mean single sequence MFE | -27.77 |
Consensus MFE | -19.40 |
Energy contribution | -20.40 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.08 |
Mean z-score | -2.85 |
Structure conservation index | 0.70 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868946 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16985323 90 + 22407834 UCCUCUUGGGCCUCCACCGCCAUCUGUCCAACAGCUGGACUUCAUGGCCAGGACCAACACUGUGACCCACAAAAGGCACACAGCAGCAGA .....((((.(((.....(((((..(((((.....)))))...))))).))).))))..(((((..((......))..)))))....... ( -26.20) >DroSec_CAF1 92969 90 + 1 UUCUCUUGAACCUCCACCGCCAUCUGUCCAGCAGCUGGACUUCAUGGCCAGGACCAGCAGUGUGACCUACAAAAGGCACACAACAGCAGA .(((.(((....(((...(((((..((((((...))))))...)))))..)))......(((((.(((.....))))))))..))).))) ( -30.10) >DroSim_CAF1 94929 90 + 1 UCCUCUUGGCCCUCCACCGCCAUCUGUCCAGCAGCUGGACUUCAUGGCCAGGACCAGCAGUGUGACCUACAAAAGGCACACAACAGCAGA ..((.(((((..(((...(((((..((((((...))))))...)))))..)))...)).(((((.(((.....))))))))..))).)). ( -31.60) >DroEre_CAF1 95605 90 + 1 ACCUCUUGGCCCUCCAUCGCCAGCUGUCCAGCAGCUGCACUUCAUGGCCAGGACCAACACUGCGACCUACAAAAGGCACACAACUGCAAA ...((((((((.......((.(((((.....))))))).......)))))))).......((.(.(((.....)))).)).......... ( -24.94) >DroYak_CAF1 95527 90 + 1 UCCUUUUGGGUCACCAUCGCCAUCUGUCCAGCAGAUGCACUUCAUGGCCAGGACCAACACUGUGACCUACAAAAGGCACACAACGGCAAA .(((((((((((((....((.(((((.....)))))))......(((......))).....))))))..))))))).............. ( -26.00) >consensus UCCUCUUGGCCCUCCACCGCCAUCUGUCCAGCAGCUGGACUUCAUGGCCAGGACCAACACUGUGACCUACAAAAGGCACACAACAGCAGA .....((((.(((.....(((((..(((((.....)))))...))))).))).))))...((((.(((.....))))))).......... (-19.40 = -20.40 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:08 2006