Locus 6025

Sequence ID 2L_DroMel_CAF1
Location 16,985,164 – 16,985,254
Length 90
Max. P 0.774710
window9567

overview

Window 7

Location 16,985,164 – 16,985,254
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 89.88
Mean single sequence MFE -17.54
Consensus MFE -14.30
Energy contribution -14.17
Covariance contribution -0.14
Combinations/Pair 1.20
Mean z-score -2.35
Structure conservation index 0.82
SVM decision value 0.54
SVM RNA-class probability 0.774710
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16985164 90 + 22407834
CCUUUCAUUUUCCCUAACUUUUCAUCAAUGCGGAAAUAUCGAUUAUGUUUAAUUGAAGUUUCGCUUUAGUU-UUGUUCGAUUUUCGCAGCU
............................(((((((..(((((.((.....((((((((.....))))))))-.)).))))))))))))... ( -16.80)
>DroSec_CAF1 92817 90 + 1
CCUUUCAUUUUCCCUAACUUUUCAUCAAUGCGGAACUAUCGAUUAUGUUUAAUUGAAGUUUCGCUUUAGUU-UUGUUCGAUUUUCGCAGCU
.............................((((((((.(((((((....))))))))))))))).......-..(((((.....)).))). ( -17.80)
>DroSim_CAF1 94777 90 + 1
CCUUUCAUUUUCCCUAACUUUUCAUCAAUGCGGAACUAUCGAUUAUGUUUAAUUGAAGUUUCGCUUUAGUU-UUGUUCGAUUUUCGCAGCU
.............................((((((((.(((((((....))))))))))))))).......-..(((((.....)).))). ( -17.80)
>DroEre_CAF1 95438 89 + 1
CCUUUCAUUU-CCCUAACUUUUCAUCAAUGUGAGACUAUCGAUUAUGUUUAAUUGAAGACUCGCUUUAGUU-UUGUUCGAUUUUCGCAGUU
..........-.................(((((((..(((((.((.....((((((((.....))))))))-.)).))))))))))))... ( -14.60)
>DroYak_CAF1 95369 89 + 1
CCUUUCAUUU-UCCUAACUUUUCAUCAAUGCUGAACUAUCGAUUAUGUUUAAUUGAAGUUUCGCUUUAGUU-UUGGUCGAUUUUCACAGCU
..........-..................((((....((((((((.....((((((((.....))))))))-.)))))))).....)))). ( -17.90)
>DroAna_CAF1 85013 91 + 1
UCUCUGCUUUUGGAAAACAUUUCAUCAGUGCGAAACUAUCGAUUAUGUUUAAUUGAAGUUUCGCUUUAGUUUUUGUUCGAUUCUGCCAGUU
.....(((..(((((((((..........((((((((.(((((((....))))))))))))))).........))))...)))))..))). ( -20.31)
>consensus
CCUUUCAUUUUCCCUAACUUUUCAUCAAUGCGGAACUAUCGAUUAUGUUUAAUUGAAGUUUCGCUUUAGUU_UUGUUCGAUUUUCGCAGCU
.............................((((((((.(((((((....)))))))))))))))........................... (-14.30 = -14.17 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:07 2006