Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,813,594 – 1,813,729 |
Length | 135 |
Max. P | 0.999746 |
Location | 1,813,594 – 1,813,689 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 98.60 |
Mean single sequence MFE | -31.13 |
Consensus MFE | -29.97 |
Energy contribution | -30.30 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.63 |
Structure conservation index | 0.96 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965363 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1813594 95 - 22407834 UUCGCUGCGAAUUUUGUGGUCGGAAUUUAACGAGCCACACAAUUUGUCAGCGGACAACCUCGAAUUAUUCAUGGGCAGCCAAAAAGGCAGGACAA (((((((((((((.((((((((........))).))))).)))))).)))))))...((..((.....))..))...(((.....)))....... ( -31.90) >DroSim_CAF1 10493 95 - 1 UUCGCUGCGAAUUUUGUGGUGGGAAUUUAACGAGCCACACAAUUUGUCAGCGGACAACCUCGAAUUAUUCAUGGGCAGCCAAAAAGGCAGGACAG (((((((((((((.((((((.(........)..)))))).)))))).)))))))...((..((.....))..))...(((.....)))....... ( -29.60) >DroEre_CAF1 22088 95 - 1 UUCGCUGCGAAUUUUGUGGUCGGAAUUUAACGAGCCACACAAUUUGUCAGCGGACAACCUCGAAUUAUUCAUGGGCAGCCAAAAAGGCAGGACAG (((((((((((((.((((((((........))).))))).)))))).)))))))...((..((.....))..))...(((.....)))....... ( -31.90) >consensus UUCGCUGCGAAUUUUGUGGUCGGAAUUUAACGAGCCACACAAUUUGUCAGCGGACAACCUCGAAUUAUUCAUGGGCAGCCAAAAAGGCAGGACAG (((((((((((((.((((((((........))).))))).)))))).)))))))...((..((.....))..))...(((.....)))....... (-29.97 = -30.30 + 0.33)
Location | 1,813,629 – 1,813,729 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.48 |
Mean single sequence MFE | -32.57 |
Consensus MFE | -28.15 |
Energy contribution | -28.02 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.26 |
Mean z-score | -3.31 |
Structure conservation index | 0.86 |
SVM decision value | 3.99 |
SVM RNA-class probability | 0.999746 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1813629 100 - 22407834 GCGAAUCUUAGGAAUCAUUGUUUCAUCGAAAUUUGCAUAAUUCGCUGCGAAUUUUGUGGUCGGAAUUUAACGAGCCACACAAUUUGUCAGCGGACAA--------------------CCU ((((((.((..(((.......)))...)).))))))....(((((((((((((.((((((((........))).))))).)))))).)))))))...--------------------... ( -32.30) >DroSim_CAF1 10528 100 - 1 GCGAAUCUUAGGAAUCAUUGUUUCAUUGAAAUUUGCAUAAUUCGCUGCGAAUUUUGUGGUGGGAAUUUAACGAGCCACACAAUUUGUCAGCGGACAA--------------------CCU ((((((.(((((((.......))).)))).))))))....(((((((((((((.((((((.(........)..)))))).)))))).)))))))...--------------------... ( -31.80) >DroPer_CAF1 25551 115 - 1 --GGAUCUUAAAGA---UCGUUCCAUUCAAAUUUACAUAAUUCGUUGCAAGUUUUGGGGCCAACAUUUAACGAGCCCCACAAUUUGUCAGCGGACAGCGGACAAGGCAUUCCACAGUCCU --.((((.....))---))........................((((((((((.(((((((..........).)))))).)))))).))))((((.(.(((........))).).)))). ( -33.60) >DroEre_CAF1 22123 100 - 1 GCGAGUCCUAAGAAUCAUUGUUUCAUUGAAAUUUGCAUAAUUCGCUGCGAAUUUUGUGGUCGGAAUUUAACGAGCCACACAAUUUGUCAGCGGACAA--------------------CCU ((((((..((((((.......))).)))..))))))....(((((((((((((.((((((((........))).))))).)))))).)))))))...--------------------... ( -32.60) >consensus GCGAAUCUUAAGAAUCAUUGUUUCAUUGAAAUUUGCAUAAUUCGCUGCGAAUUUUGUGGUCGGAAUUUAACGAGCCACACAAUUUGUCAGCGGACAA____________________CCU ((((((.(((((((.......))).)))).))))))....(((((((((((((.((((((((........)).)))))).)))))).))))))).......................... (-28.15 = -28.02 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:43 2006