Locus 6019

Sequence ID 2L_DroMel_CAF1
Location 16,959,047 – 16,959,142
Length 95
Max. P 0.990353
window9557

overview

Window 7

Location 16,959,047 – 16,959,142
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 89.53
Mean single sequence MFE -36.02
Consensus MFE -30.90
Energy contribution -30.96
Covariance contribution 0.06
Combinations/Pair 1.25
Mean z-score -3.12
Structure conservation index 0.86
SVM decision value 2.21
SVM RNA-class probability 0.990353
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16959047 95 - 22407834
GGGGCAGAGUGGCAGGAUGCCAGAGGGUACCACACAUGUUGAGAGCUUUCUGGCUUUAGCUGGAAAAUGUUGCUUUUUAUGCAGCAUCUGCAGCA
...(((((..(((..((.((((((((((.((((....).)).).))))))))))))..)))......((((((.......))))))))))).... ( -34.30)
>DroSec_CAF1 66754 95 - 1
GGGGCGGAGCGGCAGGAUGCCAGAGGGUACCACACAUGUUUAGAGCUUUCUGGCUUUAGCUGGAAAAUGUUGCUUUUUAUGCAGCAUCUGCAGCA
...(((((.((((..((.((((((((((.(.((....))...).))))))))))))..)))).....((((((.......))))))))))).... ( -34.90)
>DroSim_CAF1 68728 95 - 1
GGGGCAGAGUAGCAGGAUGCCAGAGGGUACCACACAUGUUGAGAGCUUUCUGGCUUUAGCUGGAAAAUGUUGCUUUUUAUGCAGCAUCUGCAGCA
...(((((.((((..((.((((((((((.((((....).)).).))))))))))))..)))).....((((((.......))))))))))).... ( -35.40)
>DroEre_CAF1 69547 93 - 1
GGGGCGGAGCGGCAGAAUGCCAGAGGGUACCA--CAUGUUGAGAGCUUUCUGGCUUUAGCUGGGAAAUGUUGCUUUUUAUGCAGCAUCUGCAGCA
...(((((.((((.(((.((((((((((.(((--.....)).).))))))))))))).)))).....((((((.......))))))))))).... ( -36.10)
>DroYak_CAF1 68359 93 - 1
GGGGCAGAGCGGCAGAAUGCCAGAGGGUACCA--CAUGUUGAGAGCUUUCUGGCUUUAGCUGGAAAAUGUUGCUUUUUAUGCAGCAUCUGCAGCA
...(((((.((((.(((.((((((((((.(((--.....)).).))))))))))))).)))).....((((((.......))))))))))).... ( -36.80)
>DroAna_CAF1 61190 87 - 1
GG--------GGCUGGUGGCCAGAAGGUGCAGCACAUGUUGAGAGCUUUCUGGCUUUAGCCAGGAAUUGUUGCUUUUUAUGCAACAUCUGCAGCA
..--------((((((.(((((((((((.((((....))))...))))))))))))))))).(.(..((((((.......))))))..).).... ( -38.60)
>consensus
GGGGCAGAGCGGCAGGAUGCCAGAGGGUACCACACAUGUUGAGAGCUUUCUGGCUUUAGCUGGAAAAUGUUGCUUUUUAUGCAGCAUCUGCAGCA
...(((((.((((.(((.((((((((((................))))))))))))).)))).....((((((.......))))))))))).... (-30.90 = -30.96 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:58 2006