Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,947,200 – 16,947,306 |
Length | 106 |
Max. P | 0.646362 |
Location | 16,947,200 – 16,947,306 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 85.74 |
Mean single sequence MFE | -30.18 |
Consensus MFE | -21.88 |
Energy contribution | -21.56 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.29 |
Mean z-score | -1.75 |
Structure conservation index | 0.72 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16947200 106 - 22407834 AACUAU-UUGCAAAU----AUUAUUAGCAUGGCAUUUUUCUAAGUGUCCUUUGGACAGUUUAUAAUUGAACUGUGGUCCAGUCGAGCGCAUCGAAUGGCCAAACGGCUGCC ......-........----.....((((..(((((((....))))))).(((((((((((((....))))))))...(((.((((.....)))).))))))))..)))).. ( -27.60) >DroSec_CAF1 59748 106 - 1 AACUAU-UUGCAAAU----GUUAUUAGCAUGGCAUUUUUCUAAGUGUCCUUUGGACAGUUUAUAAUUGAACUGUGGCCCAGUCGAGCGCAUCGAAUGGCCAAACGGCUGCC ......-..(((..(----(((.....((.(((((((....)))))))...)).((((((((....))))))))((((...((((.....))))..)))).))))..))). ( -30.40) >DroEre_CAF1 62654 106 - 1 AACUAU-UUGCAAAU----GUUAUUAGCAUGGCGUUUCUCUGAGUGUGCUGUGGACAGUUUAUAAUUGAACUGUGGUCCAGUCGAGCGCAUCGAAUGGCCAAACGGCUGCC .(((..-..(.((((----(((((....))))))))))....)))..(((((..((((((((....))))))))((.(((.((((.....)))).)))))..))))).... ( -31.50) >DroYak_CAF1 61125 106 - 1 AACUAU-CUGCAAAU----GUUAUUGGCAAUGCAUUUUUCUGAGUGUCCUGCGGACAGUUUAUAAUUGAACUGUGGUCCAGUCGAGCGCAUCGAAUGGCCAAACGGCUGCC ......-..(((..(----(((.((.(((..((((((....))))))..))).))(((((((....)))))))(((.(((.((((.....)))).))))))))))..))). ( -31.90) >DroAna_CAF1 54993 108 - 1 ---UAUAUUUCAAUUAUUUCUUUUAAAUAGGAUAUUUUUUUCACUGCCUUUUGGGCAGUUUAUAAUUGAACUGUGGCCCAGUCGAGCGAAUCGAAUGGCCAAACGACUGCC ---.(((.(((((((((.((((......))))..........((((((.....))))))..))))))))).)))((((...((((.....))))..))))........... ( -29.50) >consensus AACUAU_UUGCAAAU____GUUAUUAGCAUGGCAUUUUUCUAAGUGUCCUUUGGACAGUUUAUAAUUGAACUGUGGUCCAGUCGAGCGCAUCGAAUGGCCAAACGGCUGCC .........................(((..(((((((....)))))))...((.((((((((....))))))))((((...((((.....))))..))))...)))))... (-21.88 = -21.56 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:55 2006