Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,940,515 – 16,940,605 |
Length | 90 |
Max. P | 0.807504 |
Location | 16,940,515 – 16,940,605 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 86.43 |
Mean single sequence MFE | -14.85 |
Consensus MFE | -13.49 |
Energy contribution | -13.05 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -1.61 |
Structure conservation index | 0.91 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807504 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16940515 90 - 22407834 UAAACAGCUCAAUCAAAUGGCAAGGAAAAAUAUUUGCAGUGCAUAAUAUAUUUAUUCCUUUAAUACAUAUAUAAUUUUGCGCAGCUUUUU .....((((..........(((((........))))).(((((..((((((.((((.....)))).)))))).....))))))))).... ( -15.60) >DroSec_CAF1 53084 82 - 1 --------UCAAUCAAAUGGCAGGGAAAAAUAUUUGCAGUGCAUAAUAUAUUUAUUCCUUUAAUACAUAUAUAAUUUUGCGCAGCUUUUU --------...........(((((........))))).(((((..((((((.((((.....)))).)))))).....)))))........ ( -12.40) >DroSim_CAF1 58202 82 - 1 --------UCAAUCAAAUGGCAGGGCAAAAUAUUUGCAGUGCAUAAUAUAUUUAUUCCUUUAAUACAUAUAUAAUUUUGCGCAGCUUUUU --------......(((.(((...((((.....)))).(((((..((((((.((((.....)))).)))))).....))))).))).))) ( -14.30) >DroEre_CAF1 55710 76 - 1 --------A-----GAAUGGCAAACAA-AAUGUUUGCGGUGCAUGAUAUAUUUAUUCCUUUAAUACAUAUAUAAUUUUGCGCAGCUUUUU --------.-----.....((((((..-...)))))).(((((..((((((.((((.....)))).)))))).....)))))........ ( -17.10) >consensus ________UCAAUCAAAUGGCAAGGAAAAAUAUUUGCAGUGCAUAAUAUAUUUAUUCCUUUAAUACAUAUAUAAUUUUGCGCAGCUUUUU ...................(((((........))))).(((((..((((((.((((.....)))).)))))).....)))))........ (-13.49 = -13.05 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:52 2006