Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,937,080 – 16,937,190 |
Length | 110 |
Max. P | 0.948525 |
Location | 16,937,080 – 16,937,190 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 70.36 |
Mean single sequence MFE | -21.95 |
Consensus MFE | -16.56 |
Energy contribution | -16.28 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.18 |
Mean z-score | -1.18 |
Structure conservation index | 0.75 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948525 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16937080 110 - 22407834 UUGCAAUCAGUCGAGCUGAGUGUUGAGCAAGCAUUGUGUUUGACACUAUUCGGGAUGCACCACUUCUACCCAAUGUGCCCAUCACUUCCCCAUCCCCAUCCCACAUCCCA ......((((.....))))((((..((((.......))))..)))).....((((((...............(((....)))..............))))))........ ( -22.15) >DroSec_CAF1 49719 101 - 1 UUGCAAUCAGUCGAGCUGAGUGUUGAGCAAGCAUUGUGUUUGACACUAUUCGGGAUGCACCACUUCUAGCCAAC--CCCCAUCACAUCCCCAUCCCCAUCCC-------A ......((((.....))))((((..((((.......))))..)))).....((((((.................--....................))))))-------. ( -21.19) >DroSim_CAF1 54830 84 - 1 UUGCAAUCAGUCGAGCUGAGUGUUGAGCAAGCAUUGUGUUUGACACUAUUCUGGAUGCACCACUUCUACCCAAC--CCCCAUCNNN------------------------ .((((.((((........(((((..((((.......))))..)))))...)))).))))...............--..........------------------------ ( -18.90) >DroYak_CAF1 49758 89 - 1 UUGCAAUCAGUCGAGCUGAGUGUUGAGCAAGCAUUGUGUUUGACACCAUUCGGGAUGCACCAUGCCCACACUAC---------------CUAUC------CCACAUCCCA .........(((((((..((((((.....))))))..))))))).......((((((.................---------------.....------...)))))). ( -21.61) >DroAna_CAF1 46818 92 - 1 UUGCAAUCAGCCGAGCUGAGUGUUGAGCAAGCAUUGUGUUUGACACUGCUCGGGCUAUGCU--UUCUCC---------CUUUCCCACUAGCAUCCCCAUCCC-------A ........((((((((..(((((..((((.......))))..))))))))).))))(((((--......---------..........))))).........-------. ( -25.89) >consensus UUGCAAUCAGUCGAGCUGAGUGUUGAGCAAGCAUUGUGUUUGACACUAUUCGGGAUGCACCACUUCUACCCAAC___CCCAUC_C____CCAUCCCCAUCCC_______A .((((.(((((...)))))((((..((((.......))))..)))).........))))................................................... (-16.56 = -16.28 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:52 2006