Locus 6012

Sequence ID 2L_DroMel_CAF1
Location 16,932,791 – 16,932,884
Length 93
Max. P 0.655291
window9547

overview

Window 7

Location 16,932,791 – 16,932,884
Length 93
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 81.06
Mean single sequence MFE -26.70
Consensus MFE -15.60
Energy contribution -15.35
Covariance contribution -0.25
Combinations/Pair 1.14
Mean z-score -2.03
Structure conservation index 0.58
SVM decision value 0.25
SVM RNA-class probability 0.655291
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16932791 93 + 22407834
AUUUUUC-----GCAGAGGUUGGGAAAUUG---------CCGUGG-----AAAGUGAGGCGAAUUUUUCACUUUGCAAAUGGCUCUGGGUUGGAUUGAUAAUAAUUUAGCCA
.......-----((((((..((..((((((---------((....-----.......))).)))))..))))))))...........((((((((((....)))))))))). ( -26.30)
>DroPse_CAF1 46218 109 + 1
CCAU-UCAGAUAUCAGAUGUCGGGA--UUGGAGGAUAGGGUGUGGUCCAAGAGGCGGGGGGAGUUUUUCACUUUGUGGAUGGCUCUGGGUUGGAUUGAUAAUAAUUUAGCCC
(((.-((.(((((...)))))..))--.))).......((.((.(((((.((((.(..((....))..).)))).))))).)).))(((((((((((....))))))))))) ( -32.90)
>DroSec_CAF1 45404 93 + 1
AUUUUUC-----GCAGAGGUUGGGAAAUUG---------CCGUGG-----AAAGUGAGGCGAAUUUUUCACUUUGCAAAUGGCUCUGGGUUGGAUUGAUAAUAAUUUAGCCG
.......-----((((((..((..((((((---------((....-----.......))).)))))..))))))))...........((((((((((....)))))))))). ( -26.30)
>DroSim_CAF1 50736 93 + 1
AUUUUUC-----GCAGAGGUUGGGAAAUUG---------CCGUGG-----AAAGUGAGGCGAAUUUUUCACUUUGCAAAUGGCUCUGGGUUGGAUUGAUAAUAAUUUAGCCG
.......-----((((((..((..((((((---------((....-----.......))).)))))..))))))))...........((((((((((....)))))))))). ( -26.30)
>DroEre_CAF1 48196 79 + 1
-------------------UUGGGAAAUUG---------CCGUGG-----AAAGUGAGGCGAAUUUUUCACUUUGCAAAUGGCUCUGGGUUGGAUUGAUAAUAAUUUAGCCG
-------------------..........(---------((.((.-----(((((((((......))))))))).))...)))....((((((((((....)))))))))). ( -23.30)
>DroYak_CAF1 45371 93 + 1
AUUCAUU-----GGAGAGGUUGGGAAAUUG---------CCGUGG-----AAAGUGAGGCGAAUUUUUCACUUUGCAAAUGGCUCUGGGUUGGAUUGAUAAUAAUUUAGCCG
..(((((-----...(((((.(..((((((---------((....-----.......))).)))))..))))))...))))).....((((((((((....)))))))))). ( -25.10)
>consensus
AUUUUUC_____GCAGAGGUUGGGAAAUUG_________CCGUGG_____AAAGUGAGGCGAAUUUUUCACUUUGCAAAUGGCUCUGGGUUGGAUUGAUAAUAAUUUAGCCG
.........................................((.(.....(((((((((......))))))))).....).))....((((((((((....)))))))))). (-15.60 = -15.35 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:49 2006