Locus 6011

Sequence ID 2L_DroMel_CAF1
Location 16,927,403 – 16,927,498
Length 95
Max. P 0.713309
window9546

overview

Window 6

Location 16,927,403 – 16,927,498
Length 95
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 80.78
Mean single sequence MFE -36.20
Consensus MFE -20.88
Energy contribution -20.90
Covariance contribution 0.02
Combinations/Pair 1.26
Mean z-score -2.12
Structure conservation index 0.58
SVM decision value 0.38
SVM RNA-class probability 0.713309
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16927403 95 - 22407834
CCUGCCAGCGGAGACAGUUGGCAGCUGGCGGUCGUGAGUGAGUUAUGGCCAAGUGCC-GUGGGAUGAACGGAUGGUUCCA----------ACUUCGGUUGG-AAGUU
.(((((((((....).)))))))).....((((((((.....)))))))).....((-((.......))))....(((((----------((....)))))-))... ( -40.40)
>DroSec_CAF1 40059 105 - 1
CCUGCCAGCGGAGACAGUUGGCAGCUGGCGGGCGUGAGUGAGUUAUGGCCAAGUGCC-GUGGAAUGAAAGGAUGGGCCGAAAUGGGAGAGACUUCGGUUGG-AAGUA
.(((((((((....).)))))))).((((..((....))..))))(((((.....((-...........))...)))))...........(((((.....)-)))). ( -35.10)
>DroSim_CAF1 44926 105 - 1
CCUGCCAGCGGAGACAGUUGGCAGCUGGCGGGCGUGAGUGAGUUAUGGCCAAGUGCC-GUGGGAUGAAAGGAUGGGCCGAAAUGGGAGAGACUUCGGUUGG-AAGUU
.(((((((((....).)))))))).((((..((....))..))))(((((.....((-...........))...)))))..........((((((.....)-))))) ( -35.60)
>DroEre_CAF1 42779 106 - 1
AAUGCCAGCGGAGACAGUUGGCAGCUGGCUGGCGUGAGUGAGUUAUGGCCAAGAGCUGGUGGGAUGAAAGGAAGGGCCUAAAUCGGAGAGACUUCGGUGGG-AAGUG
...(((((((....)..(((((...(((((.((....)).)))))..)))))..))))))..(((...(((.....)))..)))......(((((.....)-)))). ( -37.70)
>DroYak_CAF1 40040 106 - 1
ACUGCCAGCGAAAACAGUUGGCAGCUGGCUGGCGUGAGUGAGUUAUGGCCAAGUGCCCCUAGGAUAAACGGAUGGGCCGAAAUCGGAGAGUUUUUGGUUGG-AAGUU
(((.(((((.((((((.(((((...(((((.((....)).)))))..))))).)).(((..(......)....)))(((....))).....)))).)))))-.))). ( -36.60)
>DroAna_CAF1 37360 99 - 1
GGUUCCGGCGGAGGCAGUUGGCAGCUAGCUGGCGUGAGUGAGUUAUGGCCAAGUACUGAUAGGGUGAC------GGC--GGAUGGGAGACUCUUUGGUUGGCAAGUU
....(((((.((((.(((((((...(((((.((....)).)))))..))).....(((....(....)------..)--))......)))))))).)))))...... ( -31.80)
>consensus
CCUGCCAGCGGAGACAGUUGGCAGCUGGCGGGCGUGAGUGAGUUAUGGCCAAGUGCC_GUGGGAUGAAAGGAUGGGCCGAAAUGGGAGAGACUUCGGUUGG_AAGUU
....(((((.(((.((.(((((...((((..((....))..))))..))))).))..............((.....))..............))).)))))...... (-20.88 = -20.90 +   0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:48 2006