| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,923,320 – 16,923,414 |
| Length | 94 |
| Max. P | 0.860675 |
| Location | 16,923,320 – 16,923,414 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 79.59 |
| Mean single sequence MFE | -25.81 |
| Consensus MFE | -15.80 |
| Energy contribution | -15.45 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.860675 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16923320 94 + 22407834 UGGGGACAGAAGAAGAGCAUUUUUUGUUAGCC-GGUUUUGGGGCGAAUGCAGAGAAUGCCAUUAAAAAUCCAGGUGGACAGAAAACGCUGGCCAA ...(((......((..(((((((((((..(((-........)))....)))))))))))..)).....)))...(((.(((......))).))). ( -26.50) >DroSec_CAF1 36121 94 + 1 UGGGGACAGAAGAAGAGCAUUUUUUGUUAGCC-AGUUUUGGGGCGAAUGCAGAGAAUGCCAUUAAAAAUCCAGGUGGACAGAAAGCGCUGCCCAA ..(((.(((.....(.(((((((((((..(((-........)))....))))))))))))........(((....))).........)))))).. ( -28.90) >DroSim_CAF1 40831 94 + 1 UGGGGACAGAAGAAGAGCAUUUUUUGUUAGCC-AGUUUUGGGGCGAAUGCAGAGAAUGCCAUUAAAAAUCCAGGUGAACAGAAAGCGCUGGCCAA ((((((......((..(((((((((((..(((-........)))....)))))))))))..)).....))).......(((......))).))). ( -25.20) >DroEre_CAF1 38675 91 + 1 CGGGGAGA---AAGGAGCAUUUUUUGUUAGCC-GGUUUUGGGGCGAAUGCAGAGAAUGCCAUUAAAAAUCCAGGUGGACAGAAAGCGCUGGCCAA .(((....---...(.(((((((((((..(((-........)))....))))))))))))........)))...(((.(((......))).))). ( -26.66) >DroWil_CAF1 58338 92 + 1 CUGCGAAA---UGAAGGUGUCUUUUGUCGGUGAAACUUUUGUAAGAAUGCAGAGAAUGGCAUUAAAAAUACAAAAAGGGAAGAGACAAGGCACCA ........---....(((((((..((((........(((((((..(((((........))))).....)))))))........))))))))))). ( -23.49) >DroYak_CAF1 35829 91 + 1 CGCAGAGA---GAGGAGCAUUUUUUGUUAGCU-GGUUUUGGGGCGAAUGCAGAGAAUGCCAUUAAAAAUCCUGGUGGACAGAAAGCGCUGGCCAA ..(((.((---.((..(((((((((((..(((-........)))....)))))))))))..)).....))))).(((.(((......))).))). ( -24.10) >consensus CGGGGACA___GAAGAGCAUUUUUUGUUAGCC_AGUUUUGGGGCGAAUGCAGAGAAUGCCAUUAAAAAUCCAGGUGGACAGAAAGCGCUGGCCAA ...............(((.(((((((((.(((......((((...((((((.....)).)))).....))))))).))))))))).)))...... (-15.80 = -15.45 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:47 2006