Locus 601

Sequence ID 2L_DroMel_CAF1
Location 1,812,175 – 1,812,268
Length 93
Max. P 0.778765
window987

overview

Window 7

Location 1,812,175 – 1,812,268
Length 93
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 72.72
Mean single sequence MFE -35.06
Consensus MFE -12.24
Energy contribution -13.60
Covariance contribution 1.36
Combinations/Pair 1.21
Mean z-score -1.85
Structure conservation index 0.35
SVM decision value 0.55
SVM RNA-class probability 0.778765
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1812175 93 + 22407834
AAUUGC-CAUAAUAAAGUCGCCUCAGUCUGGAGAAAGGCCUUUCUCUU-CGUG--UGG----CAGGC------------------GGUUGAUGGACUGAGG-GGGCGUGGUCCUGGCAUU
...(((-((..((...(((.((((((((((..((...((((.((.(..-...)--.))----.))))------------------..))..))))))))))-.)))...))..))))).. ( -38.40)
>DroSec_CAF1 32340 94 + 1
AAUUGC-CAUAAUAAAGUCGCCUCAGUCUGGAGAAAGGCCUUUCUCAU-CGGG--UGG----AAGGC------------------GGUGGAAGGCCUGAGGGGGGCGUGGUCCUGGCAUU
...(((-((..((.....((((((..((.......(((((((.(.(((-((..--...----....)------------------))))))))))))))..))))))..))..))))).. ( -33.31)
>DroSim_CAF1 9126 93 + 1
AAUUGC-CAUAAUAAAGUCGCCUCAGUCUGGAGAAAGGCCUUUCUCUU-CGGG--UGG----AAGGA------------------GGUGGAAGGCCUGAGG-GGGCGUGGUCCUGGCAUU
...(((-((..((...(((.((((..((....)).(((((((((((((-(...--...----..)))------------------)).)))))))))))))-.)))...))..))))).. ( -39.40)
>DroPer_CAF1 23445 119 + 1
AAUUGGCAAUAAUAAAGUCGCAUCAGGUCCUGAAAGCGCCUAUCCCUAUUGAGUAUGGACGGCAGGCAUUGUUAGAGAGGGGAGGAAUGGCAGGGCAGAGCAGGGCACGGU-UUGGCAUC
.....((...(((...(((((.((..((((((..(...(((.(((((.((((..(((..(....).)))..))))..))))))))..)..)))))).))))..)))...))-)..))... ( -29.00)
>DroEre_CAF1 20634 93 + 1
AAUUGC-CAUAAUAAAGUCGCCUCAGUUUGGGGAAAGGCCUUUUUCCA-CGGG--AGA----AAGGC------------------AGUGGGAGGCCGAAGG-GGGCGUGGUCCUGGCAUU
...(((-((..((.....((((((..(((((...(..((((((((((.-..))--)))----)))))------------------..)......))))).)-)))))..))..))))).. ( -35.20)
>consensus
AAUUGC_CAUAAUAAAGUCGCCUCAGUCUGGAGAAAGGCCUUUCUCUU_CGGG__UGG____AAGGC__________________GGUGGAAGGCCUGAGG_GGGCGUGGUCCUGGCAUU
................((((((...((((......(((((((((............................................))))))))).....))))..)))...)))... (-12.24 = -13.60 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:41 2006