| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,921,724 – 16,921,814 |
| Length | 90 |
| Max. P | 0.815047 |
| Location | 16,921,724 – 16,921,814 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 78.23 |
| Mean single sequence MFE | -27.36 |
| Consensus MFE | -19.83 |
| Energy contribution | -20.97 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815047 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16921724 90 + 22407834 CAUCAUGCCCUACCUUUUAAUGGCAUAUUGCUGCUGGGCUAUUGUUUGUUGUGCCUGAAUGCAUUAUGUUGGGUGGUGGGGUGCAAAAAU------------- ......((((((((......(((((((.(((...(((((.............)))))...))).)))))))...))))))))........------------- ( -28.52) >DroSec_CAF1 34547 90 + 1 CAUCAUGCCCUACCUUUUAAUGGCAUAUUGCUGCUGGGCUAUUGUUUGUUGUGCCUGAAUGCAUUAUGUUGGGUGGUGGGGGGCAGAAAU------------- ..((.((((((.((......(((((((.(((...(((((.............)))))...))).)))))))......))))))))))...------------- ( -28.12) >DroSim_CAF1 39253 90 + 1 CAUCAUGCCCUACCUUUUAAUGGCAUAUUGCUGCUGGGCUAUUGUUUGUUGUGCCUGAAUGCAUUAUGUUGGGUGGUGGGGUGCAGAAAU------------- ......((((((((......(((((((.(((...(((((.............)))))...))).)))))))...))))))))........------------- ( -28.52) >DroEre_CAF1 37202 90 + 1 CAUCAUGCCCUACCUUUUAAUGGCAUAUUGCUGCCGGGCCAUUGUUUGUUGCGCCUGAAUGCAUAAUGUUUGCUAGUGGACGGCAAAAAG------------- ....(((((............))))).((((((((((((((........)).))))....(((.......)))....)).))))))....------------- ( -23.30) >DroYak_CAF1 34241 90 + 1 CAUCAUACUCUACCUUUUAAUGGCAUAUUGCUGCCGGGCCAUUGUUUGUCGGGUCUGAAUGCAUUAUGUUGGUUGGUGGAGGGCAAAAAU------------- .......(((((((......(((((((.(((...((((((...........))))))...))).)))))))...))))))).........------------- ( -27.90) >DroPer_CAF1 33531 96 + 1 UUUCUU--CGUUCAUUUUUACGGCAUAUUGC---UGGGCCAUUGUUCGUCAUGCCUGAGUGCAUGC--CCGAGUGCAGGAGUGCAGGAGUGCGGCAGAGGGAG .(((((--(...........((((.....))---)).(((.(((((((.(((((......))))).--.)))..))))..(..(....)..)))).)))))). ( -27.80) >consensus CAUCAUGCCCUACCUUUUAAUGGCAUAUUGCUGCUGGGCCAUUGUUUGUUGUGCCUGAAUGCAUUAUGUUGGGUGGUGGAGGGCAAAAAU_____________ .......(((((((......(((((((.(((...(((((.............)))))...))).)))))))...)))))))...................... (-19.83 = -20.97 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:46 2006