Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,919,458 – 16,919,556 |
Length | 98 |
Max. P | 0.783548 |
Location | 16,919,458 – 16,919,556 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 73.08 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -16.09 |
Energy contribution | -16.43 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.28 |
Mean z-score | -1.65 |
Structure conservation index | 0.59 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.783548 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16919458 98 - 22407834 UUUAAUUGAGGGCCAGUAUAGACUUCUGUGGCACCCUUAAAUA------UAGUUUGCUAAUAUGCUCUGUAAUAUUCUACCACU---GCAGUGGCCAUAGUCUACCC .........(((......((((((...(((((.........((------(((...((......)).))))).........(((.---...))))))))))))))))) ( -22.20) >DroSim_CAF1 36983 90 - 1 UUUAAUUGGGGGGCAGUACAGACUUCUGUGGCACCCUCAAAUG------UAGUUUG--------CUCUGUAAUGUUAUACCACU---GCAGUGGGCAUAGCCUACCC .....(((((((((..(((((....))))))).))))))).((------((((..(--------(........))......)))---)))((((((...)))))).. ( -29.00) >DroYak_CAF1 31979 107 - 1 UUUGAUUGAGGGCCAGUAGAGACUUCAGAGGCACCCUCAGAUAAUUUGACGUAUUUCCAAUAUGCUCUGUGAUGUUCUAUCACAUAGCCGGUAGGCAUAGCCUACCC .....((((((((((((....))).....)))..)))))).......................(((.(((((((...))))))).))).(((((((...))))))). ( -30.10) >consensus UUUAAUUGAGGGCCAGUACAGACUUCUGUGGCACCCUCAAAUA______UAGUUUGC_AAUAUGCUCUGUAAUGUUCUACCACU___GCAGUGGGCAUAGCCUACCC .....(((((((....(((((....)))))...)))))))..................................................((((((...)))))).. (-16.09 = -16.43 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:45 2006