Locus 6006

Sequence ID 2L_DroMel_CAF1
Location 16,916,030 – 16,916,129
Length 99
Max. P 0.607711
window9540

overview

Window 0

Location 16,916,030 – 16,916,129
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 87.47
Mean single sequence MFE -26.72
Consensus MFE -21.35
Energy contribution -22.24
Covariance contribution 0.89
Combinations/Pair 1.10
Mean z-score -2.09
Structure conservation index 0.80
SVM decision value 0.15
SVM RNA-class probability 0.607711
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16916030 99 - 22407834
AUAAUUUUAUGGUUGGCUGCAGUGGAAUAGGAAAGGCCAACACCAGAGUAAAAGCCAUUGUAGUCGGCCGAGUAGCAGGCCAUUAAUGGAAGUAAAUGG
.........((((((((((((((((.........((......))..........)))))))))))))))).........(((((.((....)).))))) ( -27.71)
>DroGri_CAF1 28668 91 - 1
AUAAUUUUAUGGCUCGCUGCAGUUGAAUAAGAAAAUCCAACUCCCGA-CAUUUGCCAUUGUCGUUGGCCAAGUGGCAGCCCAU-AAUGGCUUU------
......((((((...((((((((((.((......)).))))).....-(((((((((.......))).)))))))))))))))-)).......------ ( -25.30)
>DroSec_CAF1 28807 99 - 1
AUAAUUUUAUGGUUGGCUGCAGUGGAAUAGGAAAGGCCAGCACCAGAGUAAAAGCCAUUGUAGUCGGCCGAGUAGCAGGCCAUUAAUGGAAGUAAAUGG
.........((((((((((((((((....((.....)).((......)).....)))))))))))))))).........(((((.((....)).))))) ( -28.00)
>DroSim_CAF1 33468 99 - 1
AUAAUUUUAUGGUUGGCUGCAGUGGAAUAGGAAAGGCCAACACCAGAGUAAAAGCCAUUGUAGUCGGCCGAGUAGCAGGCCAUUAAUGGAAGUAAAUGG
.........((((((((((((((((.........((......))..........)))))))))))))))).........(((((.((....)).))))) ( -27.71)
>DroEre_CAF1 31256 98 - 1
AUAAUUUUAUGGUUGGCUGCAGUGGAAUAGGAGAGGCCAACACCAAAGUAAAAGCCUUUGUAGUCGGCC-AGUAGCAGGCCAUUAAUGGAAGUAAAUGG
........(((((..(((((.((.((...(.((((((..((......))....)))))).)..)).)).-.)))))..)))))................ ( -24.70)
>DroYak_CAF1 28481 98 - 1
AUAAUUUUAUGGUUGGCUGCAGUGGAAUAGGAGAGGCCAACACCACAGUAAAAGCCUUUGUAGUCAGCC-AGUAGGAGGCCAUUAAUGGAAGUAAAUGG
....(((((((((((((((((((((....((.....))....)))).((....))...)))))))))))-).)))))..(((((.((....)).))))) ( -26.90)
>consensus
AUAAUUUUAUGGUUGGCUGCAGUGGAAUAGGAAAGGCCAACACCAGAGUAAAAGCCAUUGUAGUCGGCCGAGUAGCAGGCCAUUAAUGGAAGUAAAUGG
..........(((((((((((((((.........((......))..........)))))))))))))))..........(((....))).......... (-21.35 = -22.24 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:42 2006