| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,905,654 – 16,905,774 |
| Length | 120 |
| Max. P | 0.803647 |
| Location | 16,905,654 – 16,905,774 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.22 |
| Mean single sequence MFE | -52.75 |
| Consensus MFE | -45.43 |
| Energy contribution | -45.88 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.803647 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16905654 120 - 22407834 GCCUGGCUGGCGAAGAAUCUGCCCAAGGGCAGCUUUGUGGGCGUGGAUCCUCGCCUGUUGUCGUUCCGCGUAUGGAAACCCAUCGAAACGGAACUAAGCUCCGCGGAAUGCCAGCUGGUG (((.(((((((((.(((.(((((....))))).)))(..((((.(....).))))..)..))((((((((.((((....))))).....(((.......)))))))))))))))))))). ( -53.80) >DroSec_CAF1 18349 120 - 1 GCAUGGCUGGCGAAGAAUCUGCCCAAGGGCAGCUUGGUGGGCGUGGAUCCUCGCCUGUUGUCGUUCCGCGUGUGGAAACCCAUCGAAACGGAACUUAGCUCCGCGGAAUGCCAACUGGUG .((((.((.((.(((...(((((....)))))))).)).))))))......((((.((((.(((((((((((.(....).)))......(((.......))))))))))).)))).)))) ( -49.30) >DroSim_CAF1 22967 120 - 1 GCCUGGCUGGCGAAGAAUCUGCCCAAAGGCAGCUUUGUGGGCGUGGAUCCGCGCUUGUUGUCGUUCCGCGUGUGGAAACCCAUCGAAACGGAACUUAGCUCCGCGGAAUGCCAACUGGUG (((.((((.((((((...(((((....))))))))))).))).(((.((((((...((((..((((((((.((((....))))))...)))))).))))..))))))...))).).))). ( -50.00) >DroEre_CAF1 20582 120 - 1 GCCUGGCUGGCAAAGAAUCUGCCCAAGGGCAGCUUCGUGGGCGUGGAUCCUCGCCUGCUGUCGUUCCGCGUGUGGAAACCCAUCGAAACGGAACUGAGCUCCGCGGAAUGCCAGCUAGUG ..(((((((((...(((.(((((....))))).)))(..((((.(....).))))..)....((((((((((.(....).)))......(((.......))))))))))))))))))).. ( -58.70) >DroYak_CAF1 18143 120 - 1 GCCUGGCUGGCAAAGAAUCUGCCCAAGGGCAGCUUCGUGGGCGUGGAUCCUCGCCUGUUGUCGUUCCGCGUGUGGAAGCCCAUCGAAACGGAACUGAGCUCCGCGGAAUGCCAGCUGGUG (((.(((((((...(((.(((((....))))).)))(..((((.(....).))))..)....(((((((..((((....))))......(((.......)))))))))))))))))))). ( -55.20) >DroAna_CAF1 16227 120 - 1 GCUUGGCUGGCCAAGAACCUGCCCAAGGGCUCUUCGGUGGGAGUGGAUCCCCGCCUGCUAUCGCUCCGGGCCUGGAAGCCCAUCGAAACGGAGCUAACCUCGUCGGAGUGCCAGCUGGUG ..(..((((((...(((...(((....)))..)))((((((........)))))).......(((((((((......))))...((...((......))...)))))))))))))..).. ( -49.50) >consensus GCCUGGCUGGCGAAGAAUCUGCCCAAGGGCAGCUUCGUGGGCGUGGAUCCUCGCCUGUUGUCGUUCCGCGUGUGGAAACCCAUCGAAACGGAACUAAGCUCCGCGGAAUGCCAGCUGGUG ..(((((((((...(((.(((((....))))).)))(..((((.(....).))))..)....(((((((..((((....))))......(((.......))))))))))))))))))).. (-45.43 = -45.88 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:38 2006