Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,904,474 – 16,904,594 |
Length | 120 |
Max. P | 0.997030 |
Location | 16,904,474 – 16,904,594 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.17 |
Mean single sequence MFE | -40.10 |
Consensus MFE | -36.88 |
Energy contribution | -36.72 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.19 |
Mean z-score | -2.20 |
Structure conservation index | 0.92 |
SVM decision value | 2.79 |
SVM RNA-class probability | 0.997030 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16904474 120 + 22407834 GCACAAUUUGAACAAUAUCCUCGACACGGAUGCCAAACUCUCCGUCCUGGUAGAAACCAGGCUCAUUGGAAAUAAACAUGUUCGCCUGGAGACCAGGAUCGUCGGGCAUCAGUCGAAUUC ....................(((((...((((((..((.....((((((((.....((((((.(((.(........))))...))))))..)))))))).))..)))))).))))).... ( -41.40) >DroSec_CAF1 17149 120 + 1 GAACAAUUUGAACAAUAUCCUCGACACGGAUGCCGAACUCUCCGUCCUGGUAGAAACCAGGCUCAUUGGAAAUAAACAUGUUCGCCUGGAGACCAGGAUCGUCGGGCAUCAGUCGAAUUC ....................(((((...((((((..((.....((((((((.....((((((.(((.(........))))...))))))..)))))))).))..)))))).))))).... ( -40.70) >DroSim_CAF1 21787 120 + 1 GCACAAUUUGAACAAUAUCCUCGACACGGAUGCCGAACUCUCCGUCCUGGUAGAAACCAGGCUCAUUGGAAAUGAACAUGUUCGCCUGGAGACCAGGAUCGUCGGGCAUCAGUCGAAUUC ....................(((((...((((((..((.....((((((((.....((((((((....))...(((....)))))))))..)))))))).))..)))))).))))).... ( -40.80) >DroEre_CAF1 19402 120 + 1 GCACAAUUUGAACAAUAUCCUCGACACGGAUGCCGAACUCUCCAUCCUGGUAGAAACCGGGCUCAUUGGAAAUAAACAUGUUCGCCUGGAGACCAGGAUCGUCGGGCAUCAGUCGAAUUC ....................(((((...((((((..((.....((((((((.....((((((.(((.(........))))...))))))..)))))))).))..)))))).))))).... ( -39.70) >DroYak_CAF1 16963 120 + 1 GCACAAUUUGUACAAUAUCCUCGACACGGAUGCCGAACUCGCCAUCCUGGUAGAAACCAGGCUCAUUGGAAAUAAACAUGUUCGCCUGGAGACCAGGAUCGUCGGGCAUUAGUCGAAUUC ....................(((((...((((((.....(((.((((((((.....((((((.(((.(........))))...))))))..)))))))).).)))))))).))))).... ( -39.30) >DroAna_CAF1 15047 120 + 1 GCACGAUUUGCACAAUGUCCUCCACCCGGAUGCCGAACUCUCCGUCCUGGUAGAAGCCGGGCUCGUUCGAAAUGAACAUGUUGGCCUGUAGACCGGGAUCAUCGGGCAUCAGGCGGAUGC (((.....))).........(((.((..((((((((....)).((((((((......((((((.((((.....)))).....))))))...)))))))).....)))))).)).)))... ( -38.70) >consensus GCACAAUUUGAACAAUAUCCUCGACACGGAUGCCGAACUCUCCGUCCUGGUAGAAACCAGGCUCAUUGGAAAUAAACAUGUUCGCCUGGAGACCAGGAUCGUCGGGCAUCAGUCGAAUUC ....................(((((...((((((..((.....((((((((.....((((((.(((.(........))))...))))))..)))))))).))..)))))).))))).... (-36.88 = -36.72 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:37 2006