Locus 6001

Sequence ID 2L_DroMel_CAF1
Location 16,900,530 – 16,900,650
Length 120
Max. P 0.975414
window9534

overview

Window 4

Location 16,900,530 – 16,900,650
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 95.28
Mean single sequence MFE -38.05
Consensus MFE -35.90
Energy contribution -35.77
Covariance contribution -0.14
Combinations/Pair 1.03
Mean z-score -1.44
Structure conservation index 0.94
SVM decision value 1.75
SVM RNA-class probability 0.975414
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16900530 120 + 22407834
AGUGCGAAGGUGAUGUUGAAAUGGGCGCCUUUGCGGGCGUCGGCGAGAAUCCGGAAGAGAGUGAGAAUGCAUUAUUACUUGGGCAAACACAGCAUCAUCGAACUCACAUUGGUAUUUUUU
.(((.(..((((((((((.....(((((((....))))))).((.......(....).((((((..........))))))..)).....))))))))))...).)))............. ( -35.40)
>DroVir_CAF1 12233 120 + 1
AGUGUGAAGGUGAUGUUGAUAUGGGCGCCUAUGCUGGCGCCGGCGAGAAUCCGGAAGAGAGUGAGAAUGCUUUAUUACUUGGGCAAACACAGCAUCAUCGAACUCACAUUGGUAUUCCUU
(((((((.((((((((((.....((((((......))))))..((((....(....)(((((......)))))....))))........))))))))))....)))))))((....)).. ( -42.10)
>DroGri_CAF1 11727 120 + 1
AGUGUGAAGGUGAUGUUGAAAUGGGCGCCUAUGCGGGCGUCGGCGACCAUCCGGAAGAGAGUGAGAAUGCUUUAUUACUUGGGCAAACACAGCAUCAUCGAACUCACAUUGGUAUUCCUU
(((((((.((((((((((...(((.((((.(((....))).)))).)))(((....).)).......(((((........)))))....))))))))))....)))))))((....)).. ( -39.90)
>DroWil_CAF1 10769 120 + 1
AGUGCGAAGGUGAUGUUGAAAUGGGCGCCUAUUCGGGCGUCGGCGAGAAUCCGGAAGAGAGUGAGAAUGCUUUAUUACUUGGGCAAACACAGCAUCAUCGAACUCACAUUGGUAUUUUUU
.(((.(..((((((((((.....(((((((....)))))))..((((....(....)(((((......)))))....))))........))))))))))...).)))............. ( -36.10)
>DroYak_CAF1 13043 120 + 1
AGUGCGAAGGUGAUGUUGAAAUGGGCGCCUUUGCCGGCGUCGGCGAGAAUCCGGAAGAGAGUGAGAAUGCAUUAUUACUUGGGCAAACACAGCAUCAUCGAACUCACAUUGGUAUUUUCU
.(((.(..((((((((((.....((((((......)))))).((.......(....).((((((..........))))))..)).....))))))))))...).)))............. ( -34.80)
>DroMoj_CAF1 11095 120 + 1
AGUGUGAAGGUGAUGUUGAAAUGGGCGCCUAUGCGGGCGUCGGCGAGCAUCCGGAAGAGAGUGAGAAUGCUUUAUUACUUGGGCAAACACAGCAUCAUCGAACUCACAUUGGUAUUCCUU
(((((((.((((((((((.....(((((((....)))))))..(..((.(((....).))))..)..(((((........)))))....))))))))))....)))))))((....)).. ( -40.00)
>consensus
AGUGCGAAGGUGAUGUUGAAAUGGGCGCCUAUGCGGGCGUCGGCGAGAAUCCGGAAGAGAGUGAGAAUGCUUUAUUACUUGGGCAAACACAGCAUCAUCGAACUCACAUUGGUAUUCCUU
.(((.(..((((((((((.....((((((......)))))).((.......(....).((((((..........))))))..)).....))))))))))...).)))............. (-35.90 = -35.77 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:36 2006