Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,811,893 – 1,812,000 |
Length | 107 |
Max. P | 0.803308 |
Location | 1,811,893 – 1,812,000 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 85.93 |
Mean single sequence MFE | -16.81 |
Consensus MFE | -12.02 |
Energy contribution | -12.34 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.21 |
Mean z-score | -1.96 |
Structure conservation index | 0.72 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.803308 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1811893 107 + 22407834 ---UAUAAACACCCCCUCCCAUCA---CUGAUGACCCACUUCUGCUUGGCCGAGAUUUGCCUACACCUCCUUCUCUGUUUUCCCCAGUAAAUAUUGUAAAUUAUUUUGGCCAA ---................((((.---..)))).............((((((((((.....((((.........(((.......))).......))))....)))))))))). ( -16.89) >DroSec_CAF1 32054 113 + 1 GAGUAUAAACACCCCCUCCCAUCAUCUCUGAUGACCCACUUCUGCUUGGCCGAGAUUUUCCUUUACCUCCUUCUCUGUUUACCCCAGUAAAUAUUGUAAAUUAUUUUGGCCAA ...................(((((....))))).............((((((((((.....(((((........(((.......)))........)))))..)))))))))). ( -19.99) >DroSim_CAF1 8843 110 + 1 ---UAUAAACACCCCCUCCCAUCAUCUCUGAUGACCCACUUCUGCUUGGCCGAGAUUUUUCUUCACCUCCUUCUCUGUUUACCCCAGUAAAUAUUGUAAAUUAUUUUGGCCAA ---................(((((....))))).............(((((((((................))))(((((((....)))))))..............))))). ( -19.29) >DroEre_CAF1 20368 105 + 1 ---UUCGAAUACC-CCUCCCUC---CUCUGAUGACCCACUUUUGCUUGGCCAAGAUUUUCCU-CACCUCCUUCUUGUCGUUCCCCCGUAAAUAUUGCAAAUUAUGUUGGCCAA ---..........-........---.....................((((((((((......-............)))........(((.....)))........))))))). ( -11.07) >consensus ___UAUAAACACCCCCUCCCAUCA_CUCUGAUGACCCACUUCUGCUUGGCCGAGAUUUUCCUUCACCUCCUUCUCUGUUUACCCCAGUAAAUAUUGUAAAUUAUUUUGGCCAA ...................((((......)))).............((((((((((.......((.........(((.......))).......))......)))))))))). (-12.02 = -12.34 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:40 2006