Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 26,075 – 26,165 |
Length | 90 |
Max. P | 0.990338 |
Location | 26,075 – 26,165 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 75.49 |
Mean single sequence MFE | -22.77 |
Consensus MFE | -12.67 |
Energy contribution | -13.48 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.26 |
Mean z-score | -2.59 |
Structure conservation index | 0.56 |
SVM decision value | 2.21 |
SVM RNA-class probability | 0.990338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 26075 90 - 22407834 UAAAAG--------GCGUAAUUGGUGCA---CCGAGUCUU--UGAAAAUA-AUAAAAUUACAAGUAUGAUUUGGAUGCAUCAAGUCCACACACCAAGAACGCAU ......--------((((..((((((((---(((((((..--........-................))))))).))).....((....)))))))..)))).. ( -21.67) >DroSec_CAF1 4128 90 - 1 UAAAAG--------GCGUAAUUGGUGCA---CCGAGUCUU--UGAAAAUA-AUAAAAUUACAAGUAUGAUUUGGAUGCAUCAAGUCCACAAACCAAGAGCGCAU ......--------((((..((((((((---(((((((..--........-................))))))).))).....(....)..)))))..)))).. ( -21.57) >DroSim_CAF1 4113 90 - 1 UAAAAG--------GCGUAAUUGGUGCA---CCGAGUCUU--UGAAAAUA-AUAAAAUUACAAGUAUGAUUUGGAUGCAUCAAGUCCACAAACCAAGAGCGCAU ......--------((((..((((((((---(((((((..--........-................))))))).))).....(....)..)))))..)))).. ( -21.57) >DroEre_CAF1 3966 90 - 1 UAAAAA--------GCGUAAUUGGUGCA---CCGAGUCUU--UGAAAAUA-AUAAAAUUCUCUGAAUGUUUUGGAUGCAUCAAAUCCACACACCAAUAACGCAU ......--------((((.(((((((..---..(((..((--(.......-...)))..))).........(((((.......)))))..))))))).)))).. ( -22.70) >DroYak_CAF1 3810 91 - 1 AAAAAA-------GGCGUAAUUGGUGCA---UCGAGUCCU--UGAACAUA-AUAAAAUUCUCAGUAUGAUUUGGAUGCAUUAAGUCCACACACCAAGAGCGCAU ......-------.((((..((((((..---((((....)--))).....-....................(((((.......)))))..))))))..)))).. ( -21.00) >DroPer_CAF1 3915 99 - 1 UACUAAUAAAUUGUGCGUGGUUGGCAGCCCUUUGGGUCCUUUUUAAAAUGCAUGAGUAG-GCAAGAGGAUUGGGAAGG----AAGCCAGAAAGCCAGAAAGCAU ............((((.((((((((..((.(((.(((((((((.....(((....))).-..))))))))).))).))----..))))....))))....)))) ( -28.10) >consensus UAAAAA________GCGUAAUUGGUGCA___CCGAGUCUU__UGAAAAUA_AUAAAAUUACAAGUAUGAUUUGGAUGCAUCAAGUCCACAAACCAAGAACGCAU ..............((((..((((((((...(((((((.............................))))))).))))))))...............)))).. (-12.67 = -13.48 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:05 2006