Locus 5997

Sequence ID 2L_DroMel_CAF1
Location 16,896,486 – 16,896,606
Length 120
Max. P 0.524849
window9525

overview

Window 5

Location 16,896,486 – 16,896,606
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.86
Mean single sequence MFE -26.52
Consensus MFE -19.42
Energy contribution -19.67
Covariance contribution 0.25
Combinations/Pair 1.22
Mean z-score -1.55
Structure conservation index 0.73
SVM decision value -0.02
SVM RNA-class probability 0.524849
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16896486 120 + 22407834
GUUGUUCUCUGAGUAAUCUUUCAACGAUUACUUGGUCAACAUAAUCAAUCUAGUGUCCGCUACGGAAACUGAUCCGGUGGUUAACUUCGUAACAGAAAGUCAAACGAAUCUCAUUGAAUU
((((....(..(((((((.......)))))))..).))))....(((((...((..((((..((((......))))))))...))(((((.((.....))...)))))....)))))... ( -28.30)
>DroSec_CAF1 9194 120 + 1
GUUGUUCUCUGAGUAAUCUUUCAACGAUUACUUGGUCAACAUAAUCAAUCUAGUGUCCGCUACGGAAACUAAUCCAGUUGUUAACUUCGUAACAAAAAGUCAAACGAAUCUCAUCGAAUU
((((....(..(((((((.......)))))))..).))))..........((((.((((...)))).))))......((((((......)))))).........(((......))).... ( -24.80)
>DroSim_CAF1 11454 120 + 1
GUUGUUUUCUGAGUAAUCUUUCAACGAUUACUUGGUCAACAUAAUCAAUCCAGUGUCCGCUACGGAAACUGAUCCGGUGGUUAACUUCGUAACAGAAAGUCAAACGAAUCUCAUCGAAUC
((((....(..(((((((.......)))))))..).))))..........((((.((((...)))).))))...((((((.....(((((.((.....))...)))))..)))))).... ( -29.60)
>DroEre_CAF1 11121 120 + 1
GUUGUCCUUUGAUUAGUCUUUCAACAAUUACUUAGUCAACAUAAUCAAACUAGUGUCCUGUACAAAAACUGAUCCGGUGGUCAACUUCGUAAAAGAAAGUCGAAUGAAUCUCAUUGGAUU
((((.(((..(((((((.(((..(((..((((.(((............)))))))...)))..))).)))))))..).)).))))(((......)))((((.((((.....)))).)))) ( -23.40)
>consensus
GUUGUUCUCUGAGUAAUCUUUCAACGAUUACUUGGUCAACAUAAUCAAUCUAGUGUCCGCUACGGAAACUGAUCCGGUGGUUAACUUCGUAACAGAAAGUCAAACGAAUCUCAUCGAAUU
((((....((((((((((.......)))))))))).))))..........((((.(((.....))).))))...((((((.....(((((.............)))))..)))))).... (-19.42 = -19.67 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:27 2006