Locus 5996

Sequence ID 2L_DroMel_CAF1
Location 16,893,651 – 16,893,771
Length 120
Max. P 0.635340
window9524

overview

Window 4

Location 16,893,651 – 16,893,771
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.33
Mean single sequence MFE -40.12
Consensus MFE -28.37
Energy contribution -26.10
Covariance contribution -2.27
Combinations/Pair 1.50
Mean z-score -1.67
Structure conservation index 0.71
SVM decision value 0.21
SVM RNA-class probability 0.635340
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16893651 120 + 22407834
UCUUCUCGGAGAACGAAGACGGUGGAUUGACCUAUAUUGGCAGCAAGAUGCUGCCCCACUUUGAUCUCUACUCUUGUUGGCGGGAGAUUAAAGUGGUUCCUCGAUACGAAAACGCCACUG
(((((.........)))))(((((((((((........((((((.....))))))((((((((((((((..((.....))..))))))))))))))....))))).((....)))))))) ( -43.80)
>DroVir_CAF1 6941 120 + 1
UCUUCCACGAGAACGAGGAUGGCGGCCUGACCUAUAUAGGCAGCAAAAUGCUGCCGCAUUUUGACCUGUACUCGUGUUGGCGUGAGAUCAAGGUGGUGCCGCGCUAUGAGAACACCACCG
.....((((((.((.(((...((.(((((.......))))).))(((((((....)))))))..))))).))))))(((((....).))))(((((((...(.......)..))))))). ( -43.40)
>DroGri_CAF1 6481 120 + 1
UCUUCCACGAGAACGAGGACGGUGGCCUAACCUAUAUUGGCAGCAAAAUGUUGCCCCACUUCGAUUUGUAUUCGUGCUGGCGUGAGAUUAAAGUUGUGCCACGCUAUGAGAAUAGCACUG
.....((((((.(((((...(((((.............((((((.....)))))))))))....))))).)))))).(((((..(........)..))))).(((((....))))).... ( -36.91)
>DroWil_CAF1 6552 120 + 1
UUUUUCACGAGAACGAAGAUGGUGGCCUGACUUAUAUCGGUAGCAAAAUGUUGCCACAUUUUGAUUUGUAUUCAUGUUGGCGUGAAAUCAAAGUGGUUCCUCGCUACGAGAAUGCUACUG
.(((((........))))).((((((..(((.......((((((.....)))))).((((((((((.....(((((....)))))))))))))))))).((((...))))...)))))). ( -32.50)
>DroMoj_CAF1 6392 120 + 1
UCUUCCAUGAGAACGAAGACGGUGGCCUCACCUACAUUGGCAGCAAAAUGUUGCCGCAUUUCGAUUUAUACUCGUGCUGGCGUGAAAUUAAAGUGGUGCCACGCUAUGAGAACUCCACCG
(((((.........)))))((((((.((((........((((((.....))))))(((...(((.......))))))(((((((..(((.....)))..)))))))))))....)))))) ( -36.40)
>DroAna_CAF1 6178 120 + 1
UCUUCCACGAGAACGAGGACGGCGGCCUCACCUACAUCGGCAGCAAAAUGCUGCCCCACUUCGAUCUCUACUCCUGUUGGCGGGAGAUCAAGGUGGUGCCGCGCUACGAGAAUGCCACAG
((((((.((....)).)))..(((((.((((((.....((((((.....)))))).......(((((((...((....))..))))))).)))))).)))))......)))......... ( -47.70)
>consensus
UCUUCCACGAGAACGAAGACGGUGGCCUGACCUAUAUUGGCAGCAAAAUGCUGCCCCACUUCGAUCUGUACUCGUGUUGGCGUGAGAUCAAAGUGGUGCCACGCUACGAGAACGCCACUG
(((((.........)))))..(((((............((((((.....)))))).(((((.((((.....(((((....))))))))).)))))..))))).................. (-28.37 = -26.10 +  -2.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:26 2006