Locus 5995

Sequence ID 2L_DroMel_CAF1
Location 16,893,451 – 16,893,571
Length 120
Max. P 0.599315
window9523

overview

Window 3

Location 16,893,451 – 16,893,571
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.61
Mean single sequence MFE -38.75
Consensus MFE -21.73
Energy contribution -23.73
Covariance contribution 2.00
Combinations/Pair 1.16
Mean z-score -2.52
Structure conservation index 0.56
SVM decision value 0.13
SVM RNA-class probability 0.599315
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16893451 120 + 22407834
ACUGUCUUCCAACUCUUUCAUAUCGGCCAUGUCUUCACAAGAGGAUGUGGCAUUGGUUAAUCUGCACCAGCAGGUCAACCGGCCAAUUAUCGACUCACCUUUGCUGAUGGCCAGCUACCU
.........................(((((((((((....)))))))))))...((((.((((((....)))))).))))(((((.(((.(((.......))).))))))))........ ( -38.80)
>DroVir_CAF1 6741 120 + 1
GCUGUCGUCGAACUCGUUCAUCUCGGCCAUGUCCUCGCAGGAGGAUGUCGCUUUGGUCAACUUGCAUCAGCAGGUCAAUCGGCCCAUCAUUGAUUCGCCGCUGCUGAUGGCCAGCUACUU
((((.(.........(((.(((..(((.((((((((....)))))))).)))..))).)))...(((((((((......((((..(((...)))..)))))))))))))).))))..... ( -42.40)
>DroGri_CAF1 6281 120 + 1
GUUGUCCUCCAACUCGUUCAUCUCGGCGAUGUCGUCGCAGGAGGAUGUUGCUUUGGUCAACUUGCAUCAGCAGGUCAAUCGACCCAUUAUCGAUUCACCGCUUCUCAUGGCCAGCUAUUU
...(((((((....((.......))(((((...))))).)))))))...(((..(((((...(((....)))(((.((((((.......)))))).)))........))))))))..... ( -36.90)
>DroWil_CAF1 6352 120 + 1
GCUAUCGUCCAACUCUUUCAUAUCGGCCAUGUCAUCGCAAGAGGAUGUUGCGUUGAUCAAUCUCCAUCAACAAAUUAAUCGACCCAUUAUCGAUUCCCCACUUCUUAUGGCCAGCUAUUU
(((...(.....)...........(((((((...((....))((.......((((((........)))))).....((((((.......))))))..))......))))))))))..... ( -25.30)
>DroMoj_CAF1 6192 120 + 1
GCUCUCAUCGAACUCCUUCAUAUCGGCCAUGUCGUCGCAGGAGGAUGUUGCGCUGGUGAAUCUGCAUCAGCAGGUCAAUCGACCCAUCAUCGAUUCGCCACUGCUGAUGGCCAGCUAUUU
((...((((...(((((.(....((((...))))..).)))))))))..))((((((.......(((((((((((.((((((.......)))))).)))..))))))))))))))..... ( -43.11)
>DroAna_CAF1 5978 120 + 1
GCUGUCUUCCAACUCCUUCAUCUCGGCCAUGUCCUCCCAGGAGGACGUGGCGCUCGUCAAUCUCCACCAGCAGGUCAACCGGCCGAUCAUCGACUCGCCCCUGCUGAUGGCCAGCUACCU
((((.....................(((((((((((....)))))))))))............(((.(((((((......(((.((........)))))))))))).))).))))..... ( -46.00)
>consensus
GCUGUCGUCCAACUCCUUCAUAUCGGCCAUGUCCUCGCAGGAGGAUGUUGCGUUGGUCAAUCUGCAUCAGCAGGUCAAUCGACCCAUCAUCGAUUCGCCACUGCUGAUGGCCAGCUACUU
((((.(...................((.(((((.((....)).))))).)).............(((((((((((.((((((.......)))))).)))..))))))))).))))..... (-21.73 = -23.73 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:25 2006