Locus 5993

Sequence ID 2L_DroMel_CAF1
Location 16,885,767 – 16,885,886
Length 119
Max. P 0.537264
window9521

overview

Window 1

Location 16,885,767 – 16,885,886
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.73
Mean single sequence MFE -24.81
Consensus MFE -13.55
Energy contribution -16.43
Covariance contribution 2.87
Combinations/Pair 1.10
Mean z-score -2.15
Structure conservation index 0.55
SVM decision value 0.01
SVM RNA-class probability 0.537264
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16885767 119 - 22407834
ACCUUGAGUAUCAAAUAAAAAAAUCGGCUUUAAUAGAAGAAAGUCUGAAGGGUUGGUGUU-UAAAAGGAAUCGAAACUUGACAGAAUAAUUUUGAUUUAUAAACCUAAGUUUACUCAAGG
.(((((((((.............((((((((........)))).)))).((.((((.(((-((....(((((((((.(((......)))))))))))).))))))))).))))))))))) ( -27.40)
>DroSec_CAF1 10248 119 - 1
AGCUUGAGUAUCAAAUAAAAAAAUCGGAUUUAAUAGAAGAAUGUCUGAAGGGUUGGUGUU-UUAAAAGAAUCGAAACUUGACAGAUUAAUUUUGAUUUAUAAACCCAAGUUUACUCAAGC
.(((((((((.............((((((.............)))))).(((((.(((..-((((((.((((...........))))..))))))..))).))))).....))))))))) ( -30.22)
>DroSim_CAF1 10478 119 - 1
ACCUUGAGUAUCAAAUAAAAAAAUCGGAUUUAAUAGAAGAAUGUCUGAAGGGUUGGUGUU-UUAAAGGAAUCGAAACUUGACAGAUUAAUUUUGAUUUAUAAACCCAAGUUUACUCAAGC
..((((((((.............((((((.............)))))).(((((.(((..-((((((.((((...........))))..))))))..))).))))).....)))))))). ( -27.02)
>DroYak_CAF1 10961 98 - 1
----------------------AACGGCUACAAUAGAAGAAAGUCUGAAGGGUAGGUGUUUUUAAAAGAAUCUAAACACGACGGAGUAAUUUUGAUUUAUAAACCUAUGCUUACUCAUGC
----------------------...((((............))))....((((((((((........(((((.(((.((......))..))).)))))........)))))))))).... ( -14.59)
>consensus
ACCUUGAGUAUCAAAUAAAAAAAUCGGAUUUAAUAGAAGAAAGUCUGAAGGGUUGGUGUU_UUAAAAGAAUCGAAACUUGACAGAUUAAUUUUGAUUUAUAAACCCAAGUUUACUCAAGC
.(((((((((.......................((((......))))..(((((.(((...((((((..(((...........)))...))))))..))).))))).....))))))))) (-13.55 = -16.43 +   2.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:23 2006