| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,885,500 – 16,885,611 |
| Length | 111 |
| Max. P | 0.659873 |
| Location | 16,885,500 – 16,885,611 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.61 |
| Mean single sequence MFE | -19.98 |
| Consensus MFE | -2.72 |
| Energy contribution | -3.60 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.14 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.659873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16885500 111 + 22407834 -ACAAUUAAUAUUCACUUG-------GGU-CUUUAAUCUAACUAAAAAAGCAUUUUAAGUAAGAAUAGUAAGCCCUAUCUGUUAAUUCCAUAAUAAAUGGUAGCAAUUUGGUUUUUAUUU -.(((.............(-------(((-..(((.(((.(((.((((....)))).))).))).)))...))))....(((((...((((.....)))))))))..))).......... ( -15.40) >DroSec_CAF1 9954 111 + 1 -AAAAUGAAUAUCCACUUG-------GGU-CUUUAGUCUAACUAAAAAGACAUUUUAAGUAAGAAUAGUAAGCCCUAUAGGUUAAUUCCAUAAUAAAUGGUGGCAAUUAGGUUUUUAUUU -.(((((((...((.((.(-------(((-..(((.(((.(((.((((....)))).))).))).)))...))))...))..(((((((((........)))).)))))))..))))))) ( -21.80) >DroSim_CAF1 10184 111 + 1 -AAAAUGAAUAUCCACUUG-------GGU-CUUUAAUCUAACUAAAAAGACAUUUUAAGUAAGAUUAGUAAGCCCUAUAGGUUAAUUCCAUAAUAAAUGGUGGCAAUUAGGUUUUUAUUU -.(((((((...((.((.(-------(((-..(((((((.(((.((((....)))).))).)))))))...))))...))..(((((((((........)))).)))))))..))))))) ( -25.50) >DroEre_CAF1 10070 103 + 1 UAAAACUAAAAUAAACUGUCCAUUAAGGCACUGAAGUCCCACUAA--AAAUACUUUA---AAAAAUAGUAAACCC-AUAGAUUACUUGUGUAAUAAAUGGUGCCAAUUU----------- ..........................(((((((((((........--....))))))---..............(-((..(((((....)))))..)))))))).....----------- ( -15.70) >DroYak_CAF1 10582 114 + 1 UAAAAUUAAAAUCCACUUUGCAUUAUGGU--UUAUAUCCCACUAAGUAAACAUUUAA---AAGAAUAGUAAGCCCUAUAGGUUAAUUGU-UGAUAAAUGGUGCAAAUUAGGUUUUUAUUU ..((((.((((((...((((((((((.((--((((..........))))))......---...((((((.((((.....)))).)))))-).....))))))))))...)))))).)))) ( -21.50) >consensus _AAAAUUAAUAUCCACUUG_______GGU_CUUUAAUCUAACUAAAAAAACAUUUUAAGUAAGAAUAGUAAGCCCUAUAGGUUAAUUCCAUAAUAAAUGGUGGCAAUUAGGUUUUUAUUU .......................................................................(((((((..((((......))))..)))).)))................ ( -2.72 = -3.60 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:21 2006