Locus 5991

Sequence ID 2L_DroMel_CAF1
Location 16,876,341 – 16,876,440
Length 99
Max. P 0.520574
window9519

overview

Window 9

Location 16,876,341 – 16,876,440
Length 99
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 80.18
Mean single sequence MFE -24.37
Consensus MFE -15.64
Energy contribution -15.87
Covariance contribution 0.23
Combinations/Pair 1.19
Mean z-score -1.36
Structure conservation index 0.64
SVM decision value -0.03
SVM RNA-class probability 0.520574
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16876341 99 - 22407834
UAAUAAAAGCCCAUCAAUUAGCAC--GUUGAUUGUAC------GGCAGUAGGUCAGUAGUAUUCAAUGGCCAAUAUCGGUGACGAAAGCAU---CGCAAGAACGAACACC
........(((...(((((((...--.)))))))...------))).((.(((((...........)))))....(((....)))..)).(---(....))......... ( -24.10)
>DroSec_CAF1 798 102 - 1
UAAUAAAAGCCCAUCAAUUAGCAC--GUUGAUUGUAC------GGCAGUAGGUCAGUAGUAGUCAAUGGCCAAUAUCGGUGACGAAAGCAUCGUCGCAAGAACGAACACC
........((......(((.((.(--(((((((((((------(((.....))).))).))))))))))).))).(((....)))..)).(((((....).))))..... ( -27.70)
>DroSim_CAF1 675 102 - 1
UAAUAAAAGCCCAUCAAUUAGCAC--GUUGAUUGUAC------GGCAGUAGGUCAGUGGUAGUCAAUGGCCAAUAUCGGUGACGAAAGCAUCGUCGCAAGAACGAACACC
........(((...(((((((...--.)))))))...------))).((.(((((.((.....)).)))))....(((....)))..)).(((((....).))))..... ( -28.80)
>DroEre_CAF1 894 96 - 1
UAAUAAAAGUCCAUCAAUUAGCAC--GUUGAUUGUAC------GGCAGUAGGUCAGU---AGUCAAUGGCCAAUAUCGGUGACGAAAGCAA---AGCAAGAACGAACAGC
.......................(--(((..((((..------.((....(((((..---......)))))....(((....)))..))..---.)))).))))...... ( -21.40)
>DroYak_CAF1 749 96 - 1
UAAUAAAAGCCCAUCAAUUAGCAC--GUCGAUUGUAC------GGCAGUAGGUCAGU---AGUCAGUGGCCAAUAUCGGUGACGAAAGCAA---UGCAAGAACGAACAUC
.......................(--((...(((((.------.((....(((((.(---....).)))))....(((....)))..))..---)))))..)))...... ( -21.60)
>DroPer_CAF1 305 92 - 1
CAAUA-AAGCCGAUCAAUUAGCAUCUGUAGAGUCUUCAGACCGGGCAGUAGGUCAGUCAUUGAGAAUGAC-GACAUCAAUGAUGGC----------------AGAACACC
.....-..(((.((((....((....)).(((((....((((........)))).(((((.....)))))-))).))..)))))))----------------........ ( -22.60)
>consensus
UAAUAAAAGCCCAUCAAUUAGCAC__GUUGAUUGUAC______GGCAGUAGGUCAGU_GUAGUCAAUGGCCAAUAUCGGUGACGAAAGCAU___CGCAAGAACGAACACC
........(((...((((((((....)))))))).........)))....(((((...........)))))....(((....)))..((......))............. (-15.64 = -15.87 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:20 2006