Locus 5990

Sequence ID 2L_DroMel_CAF1
Location 16,872,947 – 16,873,043
Length 96
Max. P 0.847197
window9518

overview

Window 8

Location 16,872,947 – 16,873,043
Length 96
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 82.49
Mean single sequence MFE -16.98
Consensus MFE -9.01
Energy contribution -9.33
Covariance contribution 0.32
Combinations/Pair 1.07
Mean z-score -2.57
Structure conservation index 0.53
SVM decision value 0.77
SVM RNA-class probability 0.847197
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16872947 96 - 22407834
UUAAUCUAUAAGGUUUUAUUAAUGAACA-----UUUAUAACAAAUCAUUUCGGGGAUCGUCUUCCCCAAACUUGAUUCAUCCCGACCAUUUAUUCUUAUCU
...........((((((((.(((....)-----)).))))..(((((....(((((......))))).....)))))......)))).............. ( -14.80)
>DroSec_CAF1 12263 96 - 1
UUAAACUAUAAGGUUUUAUUAAUGAACA-----UUUAUAAUAAAUCCUUUGGGGGAUCGUCUUCCCCAAAGUUUAUCCAUCCCGACCAUCUAAUCUUAUCU
.((((((...(((.(((((((.(((...-----.)))))))))).)))((((((((.....)))))))))))))).......................... ( -19.50)
>DroSim_CAF1 14782 96 - 1
UCAAUCUAUAAGGUUUUAUUAAUGAACA-----UUAAUAACAAAUCAUUUAAGGGAUCGUCUUCCCCAAACUUUAUCCAUCCCGACCAUCUAUUCUUAUCU
.......((((((((((((((((....)-----)))))).............((((......)))).)))))))))......................... ( -13.50)
>DroEre_CAF1 44261 100 - 1
UCGAUCUCUGGGGUUUUGUUAAUGAUCACCAUAUUUAUAGGAAAUCAUUUAGGG-GUCGUCUCCCCCAAACUUUGACCAUCCCGACCAUCUAUUCUUAUCU
..(((...((((((...(((((((((..((.........))..))))....(((-(......))))......))))).))))))...)))........... ( -19.90)
>DroYak_CAF1 7645 98 - 1
UAAAUUUUUGGGGUUUUGUUAAUGAUCAU--UAUUUAUAACAAAUCAUUUCGGG-GUCGUCUCCCCCAAUCUUUAUUUCUCCCGACCAUCUAUUCUAAUCU
.......((((((.(((((((.(((....--...)))))))))).).....(((-(......))))..............)))))................ ( -17.20)
>consensus
UCAAUCUAUAAGGUUUUAUUAAUGAACA_____UUUAUAACAAAUCAUUUAGGGGAUCGUCUUCCCCAAACUUUAUCCAUCCCGACCAUCUAUUCUUAUCU
...........((((.....(((((...................)))))..(((((......)))))................)))).............. ( -9.01 =  -9.33 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:19 2006