Locus 5989

Sequence ID 2L_DroMel_CAF1
Location 16,871,974 – 16,872,067
Length 93
Max. P 0.996570
window9517

overview

Window 7

Location 16,871,974 – 16,872,067
Length 93
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 77.07
Mean single sequence MFE -22.80
Consensus MFE -13.49
Energy contribution -15.30
Covariance contribution 1.81
Combinations/Pair 1.12
Mean z-score -2.80
Structure conservation index 0.59
SVM decision value 2.72
SVM RNA-class probability 0.996570
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16871974 93 - 22407834
AAAAU-------------------UCAAACUGAACUCGCAAAUAAUGUUGGCUUUUUGCUUAAAAUUAAGAUCUUUGGCAUUUUAGCUAAGGGAAUUUGAAAGGCCAAUAAA
.....-------------------.....................((((((((((((.((((....)))).((((((((......)))))))).....)))))))))))).. ( -22.90)
>DroSec_CAF1 11289 93 - 1
AAAAU-------------------UCUAACUAAACUGACACAUAAUGUUGGCCUUUUGCUUAAAAUUAAGAUCUUUGGCAUUUUAGCUAAGGGAAUUUGAAAGACCAUUAAA
.....-------------------........................(((.(((((.((((....)))).((((((((......)))))))).....))))).)))..... ( -14.90)
>DroSim_CAF1 13806 93 - 1
AAAAU-------------------UCUAACUAAACUGACACAUAAUGUUGGCUUUUUGCUUAAAAUUAAGAUCUUUGGCGUUUUAGCUAAGGAAAUUUGAAAGGCCAAUAAA
.....-------------------.....................((((((((((((.((((....)))).((((((((......)))))))).....)))))))))))).. ( -24.50)
>DroYak_CAF1 6645 111 - 1
AAAAUGGGAAUAUAUGUAUAACAGUCAAACUAAAGUGCCAAAUGAUUUUGCCUUUUGGGUUAAAAUUAACUCCUUUGGCACUUUAGGUAAGUCAAUUUGA-AGGUAAAUACA
..............(((((.((..((((((((((((((((((((((((((((.....)).)))))))).....)))))))))))))(.....)..)))))-..))..))))) ( -28.90)
>consensus
AAAAU___________________UCAAACUAAACUGACAAAUAAUGUUGGCUUUUUGCUUAAAAUUAAGAUCUUUGGCAUUUUAGCUAAGGGAAUUUGAAAGGCCAAUAAA
.............................................((((((((((((.((((....)))).((((((((......)))))))).....)))))))))))).. (-13.49 = -15.30 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:18 2006