Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,868,819 – 16,868,911 |
Length | 92 |
Max. P | 0.500000 |
Location | 16,868,819 – 16,868,911 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.78 |
Mean single sequence MFE | -19.15 |
Consensus MFE | -9.95 |
Energy contribution | -10.62 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.93 |
Structure conservation index | 0.52 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16868819 92 - 22407834 ---------------UCAAAGGAUAGCGG----------UCCGCACUAAUAAGUUUUAAG---AAAAAUGAAAAUGAAAAAUCGUUUGUGCAUUUUUAUAAGUGCAAAAAUAUGCAAAUA ---------------.....((((....)----------)))(((((.((((........---..(((((.((((((....))))))...))))))))).)))))............... ( -17.00) >DroVir_CAF1 22407 102 - 1 CUUCCCUUUUGGUCAUCAAAGGAUCGCCGC---------GCCGCACUAAUAAGUUUUCAA---------GAAAAUGAAAAAUCGUUUGUGCAUUUUUAUAAGUGCAAAAAUAUGCAAAUC ..........(((.(((....))).)))..---------...(((((.(((((..(.((.---------..((((((....)))))).)).)..))))).)))))............... ( -19.30) >DroPse_CAF1 31123 102 - 1 ---------------UCAAAGGAUGGCCGAGCGAGAGCGGGCGCACUAAUAAGUUUUAAG---AAAAAUGAAAAUGAAAAAUCGUUUGUGCAUUUUUAUAAGUGCAAAAAUAUGCAAAUA ---------------.....(.((((((..((....)).)))(((((.((((........---..(((((.((((((....))))))...))))))))).))))).....))).)..... ( -23.60) >DroWil_CAF1 28167 92 - 1 ---------------UCAAAGGCUCGCCG-------------GCACUAAUAAGUUUUCGAGCACAAAAUGAAAAUGAAAAAUCGUUUGUGCAUUUUUAUAAGUGCAAAAAUAUGCAAAUC ---------------......(((((..(-------------((........)))..)))))..((((((.((((((....))))))...))))))......((((......)))).... ( -18.30) >DroYak_CAF1 3568 86 - 1 ---------------UCAAAGGAUAGCGG----------GCCGCACUAAUAAGUUUUAAG---AAAAAU------GAAAAAUCGUUUGUGCAUUUUUAUAAGUGCAAAAAUAUGCAAAUA ---------------..........(((.----------...(((((.(((((.......---..((((------((....)))))).......))))).))))).......)))..... ( -13.09) >DroPer_CAF1 33296 102 - 1 ---------------UCAAAGGAUGGCCGAGCGAGAGCGGGCGCACUAAUAAGUUUUAAG---AAAAAUGAAAAUGAAAAAUCGUUUGUGCAUUUUUAUAAGUGCAAAAAUAUGCAAAUA ---------------.....(.((((((..((....)).)))(((((.((((........---..(((((.((((((....))))))...))))))))).))))).....))).)..... ( -23.60) >consensus _______________UCAAAGGAUAGCCG__________GCCGCACUAAUAAGUUUUAAG___AAAAAUGAAAAUGAAAAAUCGUUUGUGCAUUUUUAUAAGUGCAAAAAUAUGCAAAUA ..........................................(((..........................((((((....)))))).(((((((....)))))))......)))..... ( -9.95 = -10.62 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:12 2006