| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,868,025 – 16,868,130 |
| Length | 105 |
| Max. P | 0.918448 |
| Location | 16,868,025 – 16,868,130 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 77.94 |
| Mean single sequence MFE | -22.59 |
| Consensus MFE | -15.81 |
| Energy contribution | -16.23 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.918448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16868025 105 - 22407834 ACCAUUGCCAGCUAGAAAAGAAAAAGAAAAAAAAAACGAAC-------AGCGAGGCAAAGACAAAAUUAAUGUGGAGACAUUAGGGAAUGUCCUGCUGCCAGGAUGUCCUUC ....(((((.(((............................-------)))..))))).............(((....))).(((((.(((((((....)))))))))))). ( -22.49) >DroSec_CAF1 7451 96 - 1 ACCAUUGCCAGCUAGAAAAGAAAAAAAA--------AGAAC-------AGCGAGGCAAAGACAAAAUUAAUGUGGAGACAUUAGCGAAUGUCCUGCUCCCAGGAUGUUCUG- ....(((((.(((...............--------.....-------)))..)))))........(((((((....))))))).((((((((((....))))))))))..- ( -23.75) >DroSim_CAF1 9915 102 - 1 ACCAUUGCCAGCUAGAAAAGCAAAAAAA--------AAAAC-GAAACGAGCGAGGCAAAGACAAAAUUAAUGUGGAGACAUUAGGGAAUGUCCUGCUCCCAGGAUGUCCUG- ....(((((.(((.....))).......--------....(-(.......)).))))).........((((((....))))))((((.(((((((....))))))))))).- ( -24.50) >DroEre_CAF1 39713 90 - 1 ACCAUUGCCAGCU-AAAA-----AAGAA--------CGAGC-------AGCGAGGCAAAGACAAAAUUAAUGUGGAGGCAUUAGGGAAUGUCCUGCUCCCAGGAUGUCCUG- ....(((((.(((-....-----.....--------.....-------)))..))))).........((((((....))))))((((.(((((((....))))))))))).- ( -23.34) >DroYak_CAF1 2819 91 - 1 ACCAUUGCCAGCUUGAAA-----AAAAA--------UGAAC-------AGCGAGGCAAAGACGAAAUUAAUGUGGAGACAUUAGGGAAUGUCCUGCUCCUAGGAUGCCCUG- ....(((((.(((.....-----.....--------.....-------)))..))))).............(((....)))(((((...((((((....)))))).)))))- ( -22.96) >DroPer_CAF1 32505 92 - 1 ACCAUUGCCAGCAGAAGGACAGAACGAA--------GGAACUGA----AACCAAGUGAAGACAAAAUUAAUGUGGAAACAUUAAGGAAUGC-------CCGGAGUGUCCUG- ....(((....))).((((((...(...--------.)......----..((..............(((((((....)))))))((.....-------))))..)))))).- ( -18.50) >consensus ACCAUUGCCAGCUAGAAAAGAAAAAAAA________AGAAC_______AGCGAGGCAAAGACAAAAUUAAUGUGGAGACAUUAGGGAAUGUCCUGCUCCCAGGAUGUCCUG_ ....(((((.(((...................................)))..))))).........((((((....))))))((((.(((((((....))))))))))).. (-15.81 = -16.23 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:09 2006