Locus 5983

Sequence ID 2L_DroMel_CAF1
Location 16,867,906 – 16,867,998
Length 92
Max. P 0.924644
window9505

overview

Window 5

Location 16,867,906 – 16,867,998
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 94.46
Mean single sequence MFE -21.28
Consensus MFE -18.40
Energy contribution -19.52
Covariance contribution 1.12
Combinations/Pair 1.12
Mean z-score -1.61
Structure conservation index 0.86
SVM decision value 1.16
SVM RNA-class probability 0.924644
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16867906 92 - 22407834
UGUUAAUUUUUCGACUACCCAACUGCUCUGCACUUUCUGGCCAAUUAACUACGUGGAGAGCGAUGGGUACAUUUUUAAUUGUUUUAAUGGAU
...(((((.......((((((..((((((.(((....(((........))).))).)))))).)))))).......)))))........... ( -20.44)
>DroSec_CAF1 7332 92 - 1
UGUUAAUUUUUCGACUACCCAACUGCUCUGCACUUUCUGGCCAAUUAACUACGCGUAGAGCGAUGGGUAGAUUUUUAAUUGUUUUAAUGGAU
..............(((((((..((((((((.(....(((........))).).)))))))).)))))))...................... ( -22.10)
>DroSim_CAF1 9796 92 - 1
UGUUAAUUUUUCGACUACCCAACUGCUCUGCACUUUCUGGCCAAUUAACUACGCGUAGAGCGAUGGGUAGAUUUUUAAUUGUUUUAAUGGAU
..............(((((((..((((((((.(....(((........))).).)))))))).)))))))...................... ( -22.10)
>DroEre_CAF1 39594 92 - 1
UGUUAAUUUUUCGACUACCCUACUGCUCUCCGCUUUCUGGCCAAUUAACUACUUGGAGAGCAAUGGGUACAUUUUUAAUUGUUUUAAUGGAU
...(((((.......(((((...(((((((((((....))).............))))))))..))))).......)))))........... ( -21.75)
>DroYak_CAF1 2700 92 - 1
UGUUAAUUUUUCGACUACCCCACUGCUCUGCGCUUUCUGGCCAAUUUACUACUUGGAGAGCAAUGGGUAGAUUUUUAAUUGUUUUAAUGGAU
..............((((((...((((((..(((....)))(((........))).))))))..))))))...................... ( -20.00)
>consensus
UGUUAAUUUUUCGACUACCCAACUGCUCUGCACUUUCUGGCCAAUUAACUACGUGGAGAGCGAUGGGUAGAUUUUUAAUUGUUUUAAUGGAU
...(((((......((((((...((((((((((....(((........))).))))))))))..))))))......)))))........... (-18.40 = -19.52 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:08 2006