Locus 5982

Sequence ID 2L_DroMel_CAF1
Location 16,866,152 – 16,866,256
Length 104
Max. P 0.886489
window9504

overview

Window 4

Location 16,866,152 – 16,866,256
Length 104
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.20
Mean single sequence MFE -37.80
Consensus MFE -26.76
Energy contribution -27.90
Covariance contribution 1.14
Combinations/Pair 1.17
Mean z-score -2.00
Structure conservation index 0.71
SVM decision value 0.94
SVM RNA-class probability 0.886489
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16866152 104 + 22407834
---------------UUUGGCAGGAGCUGAUUGUUUCAUCUGGCCAGGCUUAAUGAAAUAACUCGUCCUGGCCGCGGCUCCAUGUCAA-ACGCAGCAGGGCAAUCGCCAGCGAAGCCCCA
---------------((((((((((((((...........((((((((....((((......))))))))))))))))))).))))))-).......((((..(((....))).)))).. ( -42.00)
>DroPse_CAF1 28126 118 + 1
GAACAACAACCAACCUUUGGCAA-UGUUGAUUGUUUCAUCGGACCAGGCUUAAUGUAAUGAAUCGUCCUGGAC-CAUCAGCACGUCAGCACGGAGCCAGGCAAACGCCAGCGAAACCUCA
...(((((.(((.....)))...-)))))...(((((.........(((((..(((..(((..(((.(((...-...))).)))))))))..))))).(((....)))...))))).... ( -30.70)
>DroSim_CAF1 8127 104 + 1
---------------UUUGGCAGGAGCUGAUUGUUUCAUCUGGCCAGGCUUAAUGAAAGAACUCGUCCUGGCCGCGGCUCCAUGUCAA-ACGCAGCAGGGCAAUCGCCAGCGAAGGCCCA
---------------((((((((((((((...........((((((((....((((......))))))))))))))))))).))))))-).......((((..(((....)))..)))). ( -45.10)
>DroEre_CAF1 37945 104 + 1
---------------UUUGGCAGGAGCUGAUUGUUUCAUCUGGCCAGGCUUAAUGAAAGGACUCGUCCUGGCCACGGCUCCAUGUCAA-ACGCAGCAGGGCAAUCGCCAGCGAAGCCCCA
---------------((((((((((((((...........((((((((....((((......))))))))))))))))))).))))))-).......((((..(((....))).)))).. ( -42.70)
>DroYak_CAF1 854 104 + 1
---------------UUUGGCAGGAGCUGAUUGUUUCAUCUGGCCAGGCUUAAUGAAAGGACUCGUCCUGGCUACGGCACCAUGUCAA-ACGCAGCCGGGCAAUCGCCAGCGAAGCCCCA
---------------(((((((((.((((...........((((((((....((((......)))))))))))))))).)).))))))-).......((((..(((....))).)))).. ( -35.60)
>DroPer_CAF1 30309 118 + 1
GAACAACAACCAACCUUUGGCAA-UGUUGAUUGUUUCAUCGGACCAGGCUUAAUGUAAUGAAUCGUCCUGGAC-CAUCAGCACGUCAGCACGGAGCCAGGCAAACGCCAGCGAAACCUCA
...(((((.(((.....)))...-)))))...(((((.........(((((..(((..(((..(((.(((...-...))).)))))))))..))))).(((....)))...))))).... ( -30.70)
>consensus
_______________UUUGGCAGGAGCUGAUUGUUUCAUCUGGCCAGGCUUAAUGAAAGGACUCGUCCUGGCC_CGGCACCAUGUCAA_ACGCAGCAGGGCAAUCGCCAGCGAAGCCCCA
................(((((((((((((...........((((((((....(((........)))))))))))))))))).))))))......((..(((....))).))......... (-26.76 = -27.90 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:07 2006