Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,810,179 – 1,810,295 |
Length | 116 |
Max. P | 0.559049 |
Location | 1,810,179 – 1,810,295 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 81.90 |
Mean single sequence MFE | -25.87 |
Consensus MFE | -17.02 |
Energy contribution | -16.81 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.15 |
Mean z-score | -1.77 |
Structure conservation index | 0.66 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559049 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1810179 116 - 22407834 GACGACAUUGUUUCGUUUAUCGUCAACUUUUCCUUAUUUUCUCCCAGCUAAGCUAAGAUUUCUCCUUGUGCCAAAGUCUUCUUUUUGUCUUGUCUGGAAAUGAGAAAAAGCGAUAC (((((.......)))))(((((....(((((.(((((((....((((.((((.(((((......(((......)))......))))).)))).))))))))))).)))))))))). ( -22.30) >DroSim_CAF1 7092 109 - 1 GCCGUCAUUGUUUCGUUUAUCGCGAAGUUUUCCUUAUUUUCUCCCA----UGCU---AUGUCUCCUUGUCACAAAGUCUUCUUUUUGUCUUGUCUGAAAAUGAGGAAAAGCGAUAC .................((((((....((((((((((((((.....----....---..(.(.....).)((((((......)))))).......)))))))))))))))))))). ( -23.40) >DroEre_CAF1 14471 114 - 1 AAGGACAUUGUUUUGUUUAUCGCGAACUUUUCUUUAUUUUCUCCCAGCUAAGCUGAGAUUUCCUCUCGCCAGAAAGUCUU--UUUUGUCUUGUCUGGAAAUGAGGAAAAGCGAUUG ..(((((......)))))(((((..................((.((((...)))).))(((((((...((((((((.(..--....).))).)))))....))))))).))))).. ( -31.90) >consensus GACGACAUUGUUUCGUUUAUCGCGAACUUUUCCUUAUUUUCUCCCAGCUAAGCU_AGAUUUCUCCUUGUCACAAAGUCUUCUUUUUGUCUUGUCUGGAAAUGAGGAAAAGCGAUAC .................((((((....((((((((((((((..........((..............))....(((.(........).)))....)))))))))))))))))))). (-17.02 = -16.81 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:37 2006