Locus 5978

Sequence ID 2L_DroMel_CAF1
Location 16,861,573 – 16,861,663
Length 90
Max. P 0.961158
window9495

overview

Window 5

Location 16,861,573 – 16,861,663
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 97.04
Mean single sequence MFE -16.27
Consensus MFE -15.98
Energy contribution -15.60
Covariance contribution -0.38
Combinations/Pair 1.10
Mean z-score -2.30
Structure conservation index 0.98
SVM decision value 1.52
SVM RNA-class probability 0.961158
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16861573 90 + 22407834
CAAAAAAUCGCCGACAGCGACAAAACAGAAUAAAUAUAUAUAUGUAUAUAAAUGUGGAGACAGAAAAAGGAUACAAUGUUCUGGGCAGAG
.......((((.....)))).....(((((((..((((((....))))))..(.((....)).)............)))))))....... ( -16.20)
>DroSec_CAF1 1154 90 + 1
CAAAAAAUCGCCGACAGCGACAAAACAGAAUAAAUAUAUAUACAUGUAUAAAUGUGGAGACAGAAAAAGGAUACAAUGUUCUGGGCAGAG
.......((((.....)))).....(((((((..((((((....))))))..(.((....)).)............)))))))....... ( -15.90)
>DroSim_CAF1 3628 90 + 1
CAAAAAAUCGCCGACAGCGACAAAACAGAAUAAAUAUAUAUACAUGUAUAAAUGUGGAGACAGAAAAAGGAUACAAUGUUCUGGGCAGAG
.......((((.....)))).....(((((((..((((((....))))))..(.((....)).)............)))))))....... ( -15.90)
>DroEre_CAF1 33369 88 + 1
CAAAAAAUCGCCGACAGCGACAAAACAGAAUAAAUAUAUAUAUAUGUAU--AUGUGGAGACAGAAAAAGGAUACAAUGUUCUGGGCAGAG
.......((((.....)))).....(((((((.((((((((....))))--))))(....)...............)))))))....... ( -17.10)
>consensus
CAAAAAAUCGCCGACAGCGACAAAACAGAAUAAAUAUAUAUACAUGUAUAAAUGUGGAGACAGAAAAAGGAUACAAUGUUCUGGGCAGAG
.......((((.....)))).....(((((((.((((((....))))))...(.((....)).)............)))))))....... (-15.98 = -15.60 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:58 2006