Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,841,322 – 16,841,416 |
Length | 94 |
Max. P | 0.985929 |
Location | 16,841,322 – 16,841,416 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 84.59 |
Mean single sequence MFE | -37.77 |
Consensus MFE | -29.27 |
Energy contribution | -29.93 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -4.03 |
Structure conservation index | 0.77 |
SVM decision value | 2.02 |
SVM RNA-class probability | 0.985929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16841322 94 + 22407834 AG---UGGCAAUUGCUGCAAUGUUGCCACAGGCAGCUGGUUUAUUGGUUGCCAAAUAUUUGUGCAACGGAAACGUGAAACACGGCAGCAAAACUUGG------ .(---..((....))..)..(((((((...((((((..(....)..))))))........(((..(((....)))....))))))))))........------ ( -37.70) >DroEre_CAF1 943 102 + 1 CGUGGUGGCAAUUGCUGCAAUGUUGCCACUGGCAGCUGGU-UAUUGGUUGCCAAAUAUUUGUGCAACGGAAACGUGAAGCACGGCAGCCAAACUUAGGAGUAC ....(..((....))..)...((((((..(((((((..(.-..)..))))))).......((((.(((....)))...))))))))))............... ( -39.00) >DroAna_CAF1 650 98 + 1 CG---UGGCAAUUGCUGCAAUGUUGCCACUGGCAGCUGGU-UAUUGGUUGCCAAAUAUUUGUGCAACGGAAACAUGAAA-ACGGCAGCAACACCACAAUACAC .(---(((...(((((((...(((((((.(((((((..(.-..)..)))))))......)).)))))(....)......-...)))))))..))))....... ( -36.60) >consensus CG___UGGCAAUUGCUGCAAUGUUGCCACUGGCAGCUGGU_UAUUGGUUGCCAAAUAUUUGUGCAACGGAAACGUGAAACACGGCAGCAAAACUUAG____AC ......(((....))).....((((((...((((((..(....)..))))))........(((..(((....)))....)))))))))............... (-29.27 = -29.93 + 0.67)
Location | 16,841,322 – 16,841,416 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 84.59 |
Mean single sequence MFE | -28.63 |
Consensus MFE | -21.07 |
Energy contribution | -21.40 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.20 |
Structure conservation index | 0.74 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782921 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16841322 94 - 22407834 ------CCAAGUUUUGCUGCCGUGUUUCACGUUUCCGUUGCACAAAUAUUUGGCAACCAAUAAACCAGCUGCCUGUGGCAACAUUGCAGCAAUUGCCA---CU ------....((.(((((((.(((((....((((..(((((.(((....))))))))....))))..((((....))))))))).)))))))..))..---.. ( -25.80) >DroEre_CAF1 943 102 - 1 GUACUCCUAAGUUUGGCUGCCGUGCUUCACGUUUCCGUUGCACAAAUAUUUGGCAACCAAUA-ACCAGCUGCCAGUGGCAACAUUGCAGCAAUUGCCACCACG ..........((.((((((((((((...(((....))).))))........)))).......-....(((((.((((....)))))))))....))))..)). ( -29.90) >DroAna_CAF1 650 98 - 1 GUGUAUUGUGGUGUUGCUGCCGU-UUUCAUGUUUCCGUUGCACAAAUAUUUGGCAACCAAUA-ACCAGCUGCCAGUGGCAACAUUGCAGCAAUUGCCA---CG .......(((((((((((((...-......(((...(((((.(((....))))))))....)-))..(.((((...)))).)...))))))).)))))---). ( -30.20) >consensus GU____CCAAGUUUUGCUGCCGUGUUUCACGUUUCCGUUGCACAAAUAUUUGGCAACCAAUA_ACCAGCUGCCAGUGGCAACAUUGCAGCAAUUGCCA___CG ...............((...................(((((.(((....))))))))..........(((((.((((....)))))))))....))....... (-21.07 = -21.40 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:56 2006