Locus 5975

Sequence ID	2L_DroMel_CAF1
Location	16,841,119 – 16,841,211
Length	92
Max. P	0.735099

overview

Window 1

Location	16,841,119 – 16,841,211
Length	92
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	62.02
Mean single sequence MFE	-17.94
Consensus MFE	-11.02
Energy contribution	-9.82
Covariance contribution	-1.20
Combinations/Pair	1.50
Mean z-score	-1.33
Structure conservation index	0.61
SVM decision value	0.43
SVM RNA-class probability	0.735099
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16841119 92 - 22407834
GAAUGCAGUGGGCUAAUUAGCAGGCAAAUGCUAGUUUCGAAAAGGUCUUUCA-AGGAGGUCGUGGCAUUAUUCAGUUGCUAAAACUAUAGGUA
.(((((..(((.((((((((((......))))))))..((((.....)))).-...)).)))..)))))....((((.....))))....... ( -19.60)
>DroPse_CAF1 1726 79 - 1
AAAUAAAACGAGUUGAUUAGCAGACACAUGCUAAUUUGUUAAAGAUUUGGUA-AACAGAUCUUUCAUAUUUUCGG-------------GAGUA
........((((..((((((((......))))))))(((.(((((((((...-..))))))))).)))..)))).-------------..... ( -19.80)
>DroEre_CAF1 738 92 - 1
GAAUGCAGUGGGUUAAUUAGCAGCCAAAUGCUAGAUUCGAAAAGGUCUUUCA-AGGAGGUCGUGGCAUUAUUCAGUUGCUAAAAGUAUAGGUA
..((((..((((((...(((((......)))))))))))....(..(((...-..)))..)(..((........))..).....))))..... ( -17.20)
>DroAna_CAF1 440 81 - 1
AAAUGCAAUGCAUUGAUUAGCAGACAAAUGUUAAAUUUUUAAAGGUCUUUCGGAGGAGG-C-----------GAGUUGCUAAAAAUAAAGUCA
....(((((.(.....((((((......))))))..........(((((......))))-)-----------).))))).............. ( -13.30)
>DroPer_CAF1 1807 79 - 1
AAAUAAAACGAGUUGAUUAGCAGACACAUGCUAAUUUGUUAAAGAUUUGGUA-AACAGAUCUUUCAUAUUUUCGG-------------GAGUA
........((((..((((((((......))))))))(((.(((((((((...-..))))))))).)))..)))).-------------..... ( -19.80)
>consensus
AAAUGCAAUGAGUUGAUUAGCAGACAAAUGCUAAUUUCUUAAAGGUCUUUCA_AGGAGGUCGUGCAAAUAUUCAGUUGCUAAAA_UA_AGGUA
........((((..((((((((......)))))))).......((((((......)))))).........))))................... (-11.02 =  -9.82 +  -1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:55 2006